Plant FIBer expression Database

Lus10021120 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G38000 523 / 0 chaperone protein dnaJ-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017189
[exp]
736 / 0 AT2G38000 571 / 0.0 chaperone protein dnaJ-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G095400
[exp]
599 / 0 AT2G38000 531 / 0.0 chaperone protein dnaJ-related (.1)
PFAM info
Representative CDS sequence
>Lus10021120 pacid=23182389 polypeptide=Lus10021120 locus=Lus10021120.g ID=Lus10021120.BGIv1.0 annot-version=v1.0
ATGGAGCAGCCGCTGCTCTCAGGTGGTCAATTGGGAGAGAAGAAGGAAAGCGGGGGGTGGAGCTCGTATGAGTATCTGGGTCGAACTGGTTCCGCGATTC
CCACCGGTTCTTTGGTGGGTACCGAAGTCAGCGTCGATGAAATCCGCTCGGCGGCCGCTTCTTCGAATATCACCCCGCCGTCGATTCATGCTCCGTTGGT
CAGTTCACCGGAACCGTATCTCACCACTAACGCTCAAGCTTATCAAGGCCAAGGTGGGTACGTCCAGCAGTATGGTGGAAGCACCGATGGGCATCAGAGG
CAAATATTGGACGAGGTTGAAATAAGGGAGTTACTGATAGACCATATCGGCCACCGATGTTGCTGGGGAAGTCGACCAGCTCGAACATGGAAAATTCATG
CAGTGGAAGACTGCAATGTGTATGTCGGTACACTCGAAACGTTCATAGAGGAAAGGGAAACTATATTCGAAACAGAACCGTATACTAGCGGTAGTAGTGG
TGCAAAGGATCGTGATCGGCCTGCACTTGGTGTATGGGAACTGGATTTGAGGTCTCAATTTCCTGTTCTTTTCTCACCTTATAAAGAAACTCAAGTCAAA
GTTCCTGGCTCCGAGGTAATCGAGAAATGCAGTGACTGTGCTGGCAGAGGAGATATCGTGTGTCCCGAATGCAATCCAAACCAAGAGCACGGGTTTTATA
AGGAGAATCAGATGTTTGAGTGTTCTGTCTGCTACGGGAGAGGGTTGATTGCTCATCGTGATGGATCGGACTCGATATGCAAGAATTGTAAGGGGAAGGG
GAAGCTTCCGTGTGCAACTTGTGGATCTCGCGGACTCGTAAAATGCAAGAAATGTGTCGGAAGTGGATCTCTCTTGACTCACAATGTTGCAATCGTCAGA
TGGAAGACACTTTTGACTCGCAAGGTAAGCGCGACGAGCGGAGCTGCATCAGTCCCAGAGGAAGTTTTCCACCAGGCCAAAGGCGTCCAGCTCTGCAACA
CGCAAGCACACCAGTGCACTCCAGCCTACTTTGCGGACTCATACTTCCTTAACAAGTTCTCATCAGAAGTCATCGCCGAGAGGGCTCCCGTGCCTCCTTC
CGCGAGGGTCATCTGCGAGAGGCATACCATATCTGTGGTGCCTGTGTCCCGTGTCACCATGTCGAACCACCGTGGGAGCTCGTTCAGCTTTTACATAATC
GGGTTTAGCAAGGAGGTGTACTTGAAGGACTACTATCCTGCCAGGTTTTGCTGGGGACTCTGCCCTTGCCTTGAGTGGTTAAAGTTGTGA
AA sequence
>Lus10021120 pacid=23182389 polypeptide=Lus10021120 locus=Lus10021120.g ID=Lus10021120.BGIv1.0 annot-version=v1.0
MEQPLLSGGQLGEKKESGGWSSYEYLGRTGSAIPTGSLVGTEVSVDEIRSAAASSNITPPSIHAPLVSSPEPYLTTNAQAYQGQGGYVQQYGGSTDGHQR
QILDEVEIRELLIDHIGHRCCWGSRPARTWKIHAVEDCNVYVGTLETFIEERETIFETEPYTSGSSGAKDRDRPALGVWELDLRSQFPVLFSPYKETQVK
VPGSEVIEKCSDCAGRGDIVCPECNPNQEHGFYKENQMFECSVCYGRGLIAHRDGSDSICKNCKGKGKLPCATCGSRGLVKCKKCVGSGSLLTHNVAIVR
WKTLLTRKVSATSGAASVPEEVFHQAKGVQLCNTQAHQCTPAYFADSYFLNKFSSEVIAERAPVPPSARVICERHTISVVPVSRVTMSNHRGSSFSFYII
GFSKEVYLKDYYPARFCWGLCPCLEWLKL

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G38000 chaperone protein dnaJ-related... Lus10021120
[exp]
0 1
AT5G03230 Protein of unknown function, D... Lus10019936
[exp]
2.0 0.7814
AT3G19080 SWIB complex BAF60b domain-con... Lus10019640
[exp]
8.3 0.7836
AT1G31930 XLG3 extra-large GTP-binding protei... Lus10012124
[exp]
10.0 0.7885
AT5G26990 Drought-responsive family prot... Lus10015214
[exp]
10.6 0.7935
AT5G65940 CHY1 beta-hydroxyisobutyryl-CoA hyd... Lus10038717
[exp]
15.5 0.7356
AT1G08570 ACHT4 atypical CYS HIS rich thiored... Lus10020254
[exp]
20.3 0.7076
AT5G48160 OBE2 OBERON2, Protein of unknown fu... Lus10006372
[exp]
22.6 0.7703
AT1G03350 BSD domain-containing protein ... Lus10012761
[exp]
26.6 0.7740
AT5G53000 TAP46 2A phosphatase associated prot... Lus10036520
[exp]
28.8 0.7684
AT3G23280 XBAT35 XB3 ortholog 5 in Arabidopsis ... Lus10009674
[exp]
32.2 0.7433

Lus10021120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.