Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07070 197 / 9e-66 Ribosomal protein L35Ae family protein (.1) AT1G74270 197 / 9e-66 Ribosomal protein L35Ae family protein (.1) AT1G41880 193 / 3e-64 Ribosomal protein L35Ae family protein (.1) AT3G55750 192 / 6e-64 Ribosomal protein L35Ae family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027754 [exp] 197 / 3e-65 AT1G74270 196 / 7e-66 Ribosomal protein L35Ae family protein (.1) Lus10035539 [exp] 194 / 2e-64 AT1G74270 215 / 4e-74 Ribosomal protein L35Ae family protein (.1) Lus10040235 [exp] 190 / 5e-63 AT1G41880 207 / 7e-71 Ribosomal protein L35Ae family protein (.1) Lus10028254 [exp] 189 / 2e-62 AT1G41880 207 / 3e-71 Ribosomal protein L35Ae family protein (.1) Lus10017188 [exp] 177 / 1e-51 AT2G38010 1100 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G194200 [exp] 198 / 3e-66 AT1G07070 219 / 8e-76 Ribosomal protein L35Ae family protein (.1) Potri.008G063200 [exp] 197 / 7e-66 AT1G07070 216 / 2e-74 Ribosomal protein L35Ae family protein (.1) Potri.008G059400 [exp] 196 / 4e-65 AT1G74270 216 / 1e-74 Ribosomal protein L35Ae family protein (.1) Potri.010G199400 [exp] 193 / 3e-64 AT1G07070 214 / 1e-73 Ribosomal protein L35Ae family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0575 [flax] [poplar] EFTPs PF01247 [flax] [poplar] Ribosomal_L35Ae Ribosomal protein L35Ae
Representative CDS sequence Show only first row Show all	>Lus10021121 pacid=23182281 polypeptide=Lus10021121 locus=Lus10021121.g ID=Lus10021121.BGIv1.0 annot-version=v1.0 ATGGTGAAGGGAAGCCAGGGAGAGCGCGTGAGACTTTATGTCCGTGGAACTGTTCTCGGGTACAAGAGGTCGAAGTCGAACCAGTACCCCAACACTTCTC TGATACAGATCGAAGGAGTGAACACTAAGGAAGACGTGAGCTGGTACCAGGGGAAGAAAATGGCGTATATCTACAAGGCCAAGGTGAAGAAGAATGGGAG TCATTACCGCTGCATTTGGGGCAAGGTGACTAGGCCACATGGTAACAGTGGAGTTGTCCGAGCTAAGTTCACCTCCAACCTCCCACCGAAGTCGATGGAA GCTCTAATGACTTGCTTCTTTCAGTCATTTATGCAAGATCTTATTGATGAAATCAACACTTTGCTTGATAGAATTGAATTTCTTGTTTTGCAGAGCTTTG TGAGAAGCATTCTTCGACTTTGCGGAGAGCGTGCAGTTTCGACTTTGGGAGCAGATACTAGTTATAGCTTCATCTTATTTTGGTTGTACCGAGTTTTGGA ATCCTTTAATGTTGACAATTTTATCAGAGAGAATGGTGTTCTGGTTGGCCATTGGCATCTGTAG
AA sequence Show only first row Show all	>Lus10021121 pacid=23182281 polypeptide=Lus10021121 locus=Lus10021121.g ID=Lus10021121.BGIv1.0 annot-version=v1.0 MVKGSQGERVRLYVRGTVLGYKRSKSNQYPNTSLIQIEGVNTKEDVSWYQGKKMAYIYKAKVKKNGSHYRCIWGKVTRPHGNSGVVRAKFTSNLPPKSME ALMTCFFQSFMQDLIDEINTLLDRIEFLVLQSFVRSILRLCGERAVSTLGADTSYSFILFWLYRVLESFNVDNFIRENGVLVGHWHL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07070			Ribosomal protein L35Ae family...		Lus10021121 [exp]	0	1
AT3G18880			Nucleic acid-binding, OB-fold-...		Lus10017467 [exp]	1.0	0.9179
AT1G76860			Small nuclear ribonucleoprotei...		Lus10040487 [exp]	2.8	0.8848
AT5G61220			LYR family of Fe/S cluster bio...		Lus10021653 [exp]	4.5	0.8350
AT3G14080			Small nuclear ribonucleoprotei...		Lus10013161 [exp]	7.6	0.8042
AT2G47640			Small nuclear ribonucleoprotei...		Lus10030367 [exp]	7.7	0.8544
AT2G27970		CKS2	CDK-subunit 2 (.1)		Lus10021405 [exp]	10.6	0.8518
AT1G76860			Small nuclear ribonucleoprotei...		Lus10011293 [exp]	12.2	0.8432
AT2G20490		NOP10, EDA27	EMBRYO SAC DEVELOPMENT ARREST ...		Lus10022910 [exp]	13.1	0.8517
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Lus10012875 [exp]	15.0	0.8272
AT5G40080			Mitochondrial ribosomal protei...		Lus10011032 [exp]	17.2	0.8570

Compare expression of checked genes

Lus10021121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.