Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38010 1043 / 0 Neutral/alkaline non-lysosomal ceramidase (.1.2) AT1G07380 1038 / 0 Neutral/alkaline non-lysosomal ceramidase (.1) AT5G58980 957 / 0 Neutral/alkaline non-lysosomal ceramidase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017188 [exp] 1331 / 0 AT2G38010 1100 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2) Lus10005873 [exp] 1070 / 0 AT1G07380 1178 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10034564 [exp] 401 / 3e-133 AT5G58980 458 / 9e-156 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10001198 [exp] 383 / 1e-128 AT1G07380 384 / 4e-129 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10034565 [exp] 351 / 4e-116 AT1G07380 356 / 5e-118 Neutral/alkaline non-lysosomal ceramidase (.1) Lus10021829 [exp] 116 / 2e-29 AT5G58980 125 / 2e-33 Neutral/alkaline non-lysosomal ceramidase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G110000 [exp] 1120 / 0 AT1G07380 1137 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.001G247400 [exp] 1087 / 0 AT1G07380 1172 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.009G040600 [exp] 1075 / 0 AT1G07380 1188 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1) Potri.002G013300 [exp] 847 / 0 AT2G38010 885 / 0.0 Neutral/alkaline non-lysosomal ceramidase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04734 [flax] [poplar] Ceramidase_alk Neutral/alkaline non-lysosomal ceramidase, N-terminal
Representative CDS sequence Show only first row Show all	>Lus10021122 pacid=23182393 polypeptide=Lus10021122 locus=Lus10021122.g ID=Lus10021122.BGIv1.0 annot-version=v1.0 ATGGCGATCTCTTTCTTCCTCACTGTCTTTCTTCTCCTCCTCATACTACCAAGCTTCTCTTTGGCTTCAAATTACTTGATCGGACTCGGAACCTACGACA TTACTGGACCCGCCGCCGACGTCAACATGATGGGCTACGCCAACACCGACCAAGTAACCTCCGGCGTCCATTTCCGCCTCCGCGCCCGTACCTTCATCGT CGCGGACCCCAACGGGAAGCAGCGTGTAGCCTATGTCAACCTCGACGCTTGTATGGCTTCCCAGATCGTCACCGTCAAAGTCCTCGAACGGCTCAAAGCT AGGTACGGAGATGTTTACACGGAGAGGAATGTGGCGATAAGTGGGATCCACACCCACGCTGGGCCAGGCGGATATCTTCAGTATGTGATCTATATTGTGA CTTCGCTTGGGTTCGTCCGTCAGTCTTTTGACGCCGTTGTTGATGGGATTGAGCAGAGTATTGTTCTTGCTCATCAGAATCTCCGGCCTGGTTCTATCTC CGTTAACACTGGGGAGCTGTTAGATGCAGGGGTGAACCGGAGCCCGAGTTCATACCTGAACAACCCACCATCCGAGAGGGCGAAGTACAAGTACAACGTC GACAAAGAAATGACACTCCTCAAGTTCGTCGACGACGAGTTCGGCCCAGTCGGAACCTTCAACTGGTTCGCAACTCACGGAACCTCCATGAGCCGCACCA ACTCCTTGATCAGCGGCGACAACAAGGGCGCCGCTGCTCGGTTCATGGAGGACTGGTTCGAAAAACGAACAATTGCCCAACCAACCGAAACAACAACTAC AAGTGCGGAGCTGCTGGAAATCGCGTCGTCGTTCAAGTCATCCAACGGTCAGAATTCGACCGTCGACTCCAGCGTTTCGAAACGTGTCAGGAGGATGCAG AGCACGACGACGTCGTCTCAGAGGAAGCCGCAATTCGTTTCGGCATTCTGTCAGACGAATTGTGGAGACGTGAGTCCCAATGTTCTGGGAGCTTTCTGTA CGGACACCGGACTTGCTTGCGATTTCAATCACAGTACCTGCAACGGCAAGAATGAGCTCTGCTACGGCCGAGGTCCCGGTTACCCAGATGAGTTCGAGAG TACGAGAGTGATCGGGGAAAGACAGTTCAGGAAGGCGGTGGAGTTGTTCAACGGTGCGAAGGAGCAGCTGAAAGGGAAGATCGATTACAGGCATGAATAT GTCGACTTTTCAAACCTGGAAGTGTCGATGGAGAATGGTGAGGTTGTGAAGACGTGTCCTGCTGCAATGGGGTTTGCTTTTGCTGCTGGAACCACTGATG GCCCTGGAGCTTTTGATTTCAAGCAAGGAGATGATAAGGGGAATGCGTTTTGGAAGCTTGTGGGGGGAGTTCTGAAGGCACCAGGGCCAGAGCAGGTGAA ATGTCAGAAACCAAAGCCTATCTTGCTTGATACTGGTGAAATGAAGCTACCTTATGACTGGGCACCAGCGATTCTTCCAGTTCAAATAATGAGGGTTGGC CAGCTTGTGATTCTCAATGTACCTGGAGAGTTTAGCACGATGGCCGGAAGGCGCCTGAGAGACGCGGTGAAACCACTGCTTACTTCAGTGGGTGGGAAAG AGTTCAACAATGTCCATATTGTTATCTCTGGACTCACTAACACATACTCGCAGTATGTTACGACCTTCGAGGAGTACCAGGTTCAAAGATACGAGGGTGC ATCAACTCTATACGGTCCACACACATTGAGCGCATACATCCAGGAATTCAACAAACTCGCCACAGCCATGGTTCGAGGCCAGCCGGTCGAGTCGGGCCCA CAGCCGCCAGACTTGCTAGACAAGCAAATCAGCCTGCTGGCTCCAGTGGTTGTGGATTCAGCTCCCTTTGGGAAAAGCTTCGGAGACATGAAACTTGACG TGCAAGCAAACGCTGCTTTCAAAAAGGGCGAAATGGTATCGGTCACCTTCCACTCCGCCTGTCCGAGGAATGATCTCAAGACAGAAGGTACATTCGCGCT GGTGGAGTATTATAAGAGATCATCTTCTTCGTCGTGGGTCCCTGTTTACGACGACGATGATTTCTGTCTGCGGTTCAAGTGGTTTAGGCCTGCCAAGCTC AGCCCCGAAAGCTTCGCTACTATAGAGTGGAGGATACCGGAAAATGCAGCTTCTGGTGTGTATAGGATCAGTCATTTCGGTGCTGCCAAGTCGATTTTGG GAGCCATCAGTCACTTCAGCGGGTCTTCGAGTGCGTTTGTAGTGTTGTAG
AA sequence Show only first row Show all	>Lus10021122 pacid=23182393 polypeptide=Lus10021122 locus=Lus10021122.g ID=Lus10021122.BGIv1.0 annot-version=v1.0 MAISFFLTVFLLLLILPSFSLASNYLIGLGTYDITGPAADVNMMGYANTDQVTSGVHFRLRARTFIVADPNGKQRVAYVNLDACMASQIVTVKVLERLKA RYGDVYTERNVAISGIHTHAGPGGYLQYVIYIVTSLGFVRQSFDAVVDGIEQSIVLAHQNLRPGSISVNTGELLDAGVNRSPSSYLNNPPSERAKYKYNV DKEMTLLKFVDDEFGPVGTFNWFATHGTSMSRTNSLISGDNKGAAARFMEDWFEKRTIAQPTETTTTSAELLEIASSFKSSNGQNSTVDSSVSKRVRRMQ STTTSSQRKPQFVSAFCQTNCGDVSPNVLGAFCTDTGLACDFNHSTCNGKNELCYGRGPGYPDEFESTRVIGERQFRKAVELFNGAKEQLKGKIDYRHEY VDFSNLEVSMENGEVVKTCPAAMGFAFAAGTTDGPGAFDFKQGDDKGNAFWKLVGGVLKAPGPEQVKCQKPKPILLDTGEMKLPYDWAPAILPVQIMRVG QLVILNVPGEFSTMAGRRLRDAVKPLLTSVGGKEFNNVHIVISGLTNTYSQYVTTFEEYQVQRYEGASTLYGPHTLSAYIQEFNKLATAMVRGQPVESGP QPPDLLDKQISLLAPVVVDSAPFGKSFGDMKLDVQANAAFKKGEMVSVTFHSACPRNDLKTEGTFALVEYYKRSSSSSWVPVYDDDDFCLRFKWFRPAKL SPESFATIEWRIPENAASGVYRISHFGAAKSILGAISHFSGSSSAFVVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38010			Neutral/alkaline non-lysosomal...		Lus10021122 [exp]	0	1
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10002296 [exp]	2.0	0.9338
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Lus10028068 [exp]	3.0	0.9133
AT2G23810		TET8	tetraspanin8 (.1)		Lus10018792 [exp]	3.5	0.9266
AT2G38010			Neutral/alkaline non-lysosomal...		Lus10017188 [exp]	5.0	0.8928
					Lus10018742 [exp]	5.8	0.9352
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034439 [exp]	14.4	0.9134
AT2G17120		LYM2	lysm domain GPI-anchored prote...		Lus10023946 [exp]	14.8	0.8809
AT5G02640			unknown protein		Lus10009066 [exp]	17.3	0.9103
AT1G76250			unknown protein		Lus10012274 [exp]	18.3	0.9241
					Lus10016571 [exp]	18.8	0.9226

Compare expression of checked genes

Lus10021122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.