Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54110 470 / 9e-169 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT5G58970 413 / 3e-146 ATUCP2 uncoupling protein 2 (.1.2) AT4G24570 186 / 6e-57 DIC2 dicarboxylate carrier 2 (.1) AT2G22500 179 / 5e-54 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT1G14140 173 / 5e-52 Mitochondrial substrate carrier family protein (.1) AT5G09470 159 / 4e-46 DIC3 dicarboxylate carrier 3 (.1) AT4G03115 154 / 2e-44 Mitochondrial substrate carrier family protein (.1) AT5G19760 129 / 3e-35 Mitochondrial substrate carrier family protein (.1) AT5G61810 93 / 2e-21 APC1 ATP/phosphate carrier 1, Mitochondrial substrate carrier family protein (.1.2) AT5G48970 92 / 6e-21 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017187 [exp] 533 / 0 AT3G54110 501 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10027755 [exp] 518 / 0 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10035538 [exp] 514 / 0 AT3G54110 512 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10040709 [exp] 406 / 2e-143 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10016445 [exp] 391 / 3e-137 AT5G58970 493 / 1e-177 uncoupling protein 2 (.1.2) Lus10030443 [exp] 175 / 8e-53 AT1G14140 421 / 3e-149 Mitochondrial substrate carrier family protein (.1) Lus10024769 [exp] 146 / 1e-41 AT4G03115 401 / 3e-141 Mitochondrial substrate carrier family protein (.1) Lus10007883 [exp] 143 / 3e-39 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1) Lus10030361 [exp] 139 / 7e-39 AT5G19760 489 / 9e-177 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G095500 [exp] 510 / 0 AT3G54110 513 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.016G110100 [exp] 498 / 1e-179 AT3G54110 483 / 5e-174 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Potri.001G247800 [exp] 423 / 5e-150 AT5G58970 456 / 3e-163 uncoupling protein 2 (.1.2) Potri.017G045150 [exp] 199 / 5e-62 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045100 [exp] 199 / 7e-62 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G047800 [exp] 195 / 3e-60 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.007G113000 [exp] 187 / 2e-57 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.002G104400 [exp] 174 / 3e-52 AT2G22500 427 / 1e-151 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.005G157300 [exp] 174 / 4e-52 AT2G22500 412 / 2e-145 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045332 [exp] 174 / 8e-52 AT2G22500 410 / 1e-144 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10021123 pacid=23182437 polypeptide=Lus10021123 locus=Lus10021123.g ID=Lus10021123.BGIv1.0 annot-version=v1.0 ATGGTAGCAGACGGCAAGGCTAAATCTGATATCTCCTTGGCCGGCACTTTCGCCAGTAGTGCCTTCGCTGCTTGCTTCGCCGAGATTTGTACGATCCCCT TGGACACGGCTAAAGTCAGGCTTCAGCTTCAAAAGTCTGTTGTTAGTGGAGATGTATTGACTGCCCCCAAATACAATGGTATGCTGGGCACTGTTGCTAC CATTGCCAGGGAAGAAGGAGCAGCATCGCTTTGGAAAGGGATAATACCTGGACTCCACCGGCAATGCCTGTTTGGTGGATTAAGGATTGGTTTGTATGAG CCCGTGAAAAACTTCTATGTTGGCCCTGACTTTGTTGGTGACGTTCCTTTGTCAAAGAAGATTCTAGCTGCACTTACAACTGGTGCTGTGGGAATTTCAA TTGCCAATCCAACTGATCTTGTGAAAGTACGTCTCCAGTCTGAGGGAAAGTTAGCACCTGGTGTGCCAAGACGCTATTCTGGAGCTATAAATGCTTATTC CACCATAGTCAAACAGGAAGGAGTTCGTGCCCTTTGGACTGGAGTTGGCCCGAATATTGCACGAAATGCCATTATAAATGCTGCTGAACTAGCCAGTTAT GATCAAGTGAAAGAAACCATACTGAAAATTCCAGGATTTAAAGACAATGCTGTCACTCATCTCTTTGCTGGTCTGGGAGCAGGATTTTTCGCCGTCTGCA TTGGTTCTCCAGTTGATGTGGTCAAGTCTAGAATGATGGGGGATCCAAGTTACAAAAGCACGATCGACTGTTTTTTGAAGACACTGAAGAACGACGGTCC TCTTGCCTTCTACAAAGGCTTCATCCCTAATTTCGGCCGCCTTGGATCCTGGAATGTAATCATGTTCCTAACCTTAGAACAGGCGAAGAAATTTGTGAGG AATCTGGAATCACCATCAACTTGA
AA sequence Show only first row Show all	>Lus10021123 pacid=23182437 polypeptide=Lus10021123 locus=Lus10021123.g ID=Lus10021123.BGIv1.0 annot-version=v1.0 MVADGKAKSDISLAGTFASSAFAACFAEICTIPLDTAKVRLQLQKSVVSGDVLTAPKYNGMLGTVATIAREEGAASLWKGIIPGLHRQCLFGGLRIGLYE PVKNFYVGPDFVGDVPLSKKILAALTTGAVGISIANPTDLVKVRLQSEGKLAPGVPRRYSGAINAYSTIVKQEGVRALWTGVGPNIARNAIINAAELASY DQVKETILKIPGFKDNAVTHLFAGLGAGFFAVCIGSPVDVVKSRMMGDPSYKSTIDCFLKTLKNDGPLAFYKGFIPNFGRLGSWNVIMFLTLEQAKKFVR NLESPST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10021123 [exp]	0	1
AT2G16770	bZIP	bZIP23	Basic-leucine zipper (bZIP) tr...		Lus10019788 [exp]	1.7	0.8956
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10041780 [exp]	7.7	0.9158
AT3G54110		ATUCP1, UCP1, U...	ARABIDOPSIS THALIANA UNCOUPLIN...		Lus10017187 [exp]	8.2	0.8554
AT1G77700			Pathogenesis-related thaumatin...		Lus10025629 [exp]	9.9	0.8621
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Lus10008423 [exp]	12.0	0.8865
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Lus10028333 [exp]	21.2	0.8759
AT5G59550			zinc finger (C3HC4-type RING f...		Lus10040278 [exp]	22.1	0.8899
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10011143 [exp]	24.2	0.8948
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Lus10043044 [exp]	24.5	0.8960
AT1G02820			Late embryogenesis abundant 3 ...		Lus10027987 [exp]	26.4	0.8593

Compare expression of checked genes

Lus10021123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.