Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01230 536 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT4G25730 119 / 6e-30 FtsJ-like methyltransferase family protein (.1) AT5G13830 56 / 7e-09 FtsJ-like methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017186 [exp] 576 / 0 AT5G01230 589 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10040439 [exp] 117 / 6e-29 AT4G25730 938 / 0.0 FtsJ-like methyltransferase family protein (.1) Lus10023555 [exp] 115 / 1e-28 AT4G25730 941 / 0.0 FtsJ-like methyltransferase family protein (.1) Lus10040283 [exp] 50 / 4e-07 AT5G13830 340 / 5e-120 FtsJ-like methyltransferase family protein (.1) Lus10023402 [exp] 49 / 1e-06 AT5G13830 312 / 1e-108 FtsJ-like methyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G056300 [exp] 526 / 0 AT5G01230 581 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.009G118400 [exp] 119 / 1e-29 AT4G25730 840 / 0.0 FtsJ-like methyltransferase family protein (.1) Potri.010G202200 [exp] 53 / 5e-08 AT5G13830 310 / 6e-108 FtsJ-like methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF01728 [flax] [poplar] FtsJ FtsJ-like methyltransferase
Representative CDS sequence Show only first row Show all	>Lus10021124 pacid=23182323 polypeptide=Lus10021124 locus=Lus10021124.g ID=Lus10021124.BGIv1.0 annot-version=v1.0 ATGGGGAAAGCTTCCAGGGATAAGCGGGACATTTACTATAGAAAAGCTAAAGAAGAAGGCTGGCGAGCTCGGAGTGCCTTCAAGCTCCTTCAGATTGACG AGGAATTCAACATATTCGAAGGGGTGAAGCGTGTGGTGGATCTATGCGCCGCACCTGGTAGCTGGAGTCAGGTTCTGAGTCGTCAACTTTATCTTCCTGC AAAGCTCTCACAAGATTCCAACGATAAGGAGGATCTTCCTCTTATTTTGGCTATTGACCTTCAACCAATGGCTCCAATCGAAGGTGTGATTCAAGTTCAA GGTGATATTACCAATGCTCGGACAGCCGAAGTTGTGATTCGGCACTTTGATGGCTGCAAAGCCGACCTAGTTGTTTGCGATGGTGCCCCCGATGTTACTG GTCTACATGACATGGATGAGTTTGTCCAATCCCAACTCATACTAGCGGGTTTGACGATCGTCACACACATACTTGGAGAAGGTGGTAAATTTATTGCGAA AATTTTTCGTGGGAAAGATACAAGTCTTCTCTACTGCCAGATCGGTCGGGATACTTCAAGAGCTAATGCAAAACACTTACCTCCTTATGCAGAGGCATTT GCAGTGTGTGAGAATTATTCTCCGCCAGAAGGGTTTAATCCGAGAGACTTGCATCGCCTCCTCGAAAAGATTGGTAGCCCCTCCGGTGCAGATGATCTAG ATTGTAGCAGCGGGTGGCTAGAAGGTGCGAACAAGATATACATCCCGTTTCTAGCCTGTGGAGACCTGAGCGGCTACGACTCCGATCGATCATACCCTCT TCCCAGAAACCCAGAAGGCGATAGTTACAAGAGCTTGGATCCAGTTCAACCTCCGATCGCTCCTCCTTATAAGAGAGCACTCGAGATGAAGAAAGCCTCC AATCTGTCTGGGAACTCGAGATGA
AA sequence Show only first row Show all	>Lus10021124 pacid=23182323 polypeptide=Lus10021124 locus=Lus10021124.g ID=Lus10021124.BGIv1.0 annot-version=v1.0 MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLSRQLYLPAKLSQDSNDKEDLPLILAIDLQPMAPIEGVIQVQ GDITNARTAEVVIRHFDGCKADLVVCDGAPDVTGLHDMDEFVQSQLILAGLTIVTHILGEGGKFIAKIFRGKDTSLLYCQIGRDTSRANAKHLPPYAEAF AVCENYSPPEGFNPRDLHRLLEKIGSPSGADDLDCSSGWLEGANKIYIPFLACGDLSGYDSDRSYPLPRNPEGDSYKSLDPVQPPIAPPYKRALEMKKAS NLSGNSR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01230			S-adenosyl-L-methionine-depend...		Lus10021124 [exp]	0	1
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Lus10043237 [exp]	4.0	0.7652
AT1G78910			Pseudouridine synthase family ...		Lus10033350 [exp]	8.1	0.7678
AT4G38900	bZIP	AtbZIP29	Basic-leucine zipper (bZIP) tr...		Lus10033174 [exp]	11.5	0.7122
AT1G78010			tRNA modification GTPase, puta...		Lus10006309 [exp]	13.6	0.7017
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10012885 [exp]	15.9	0.7429
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10042995 [exp]	17.7	0.7302
AT3G56320			PAP/OAS1 substrate-binding dom...		Lus10030537 [exp]	21.8	0.7422
AT1G70620			cyclin-related (.1.2.3)		Lus10000440 [exp]	23.4	0.7557
AT3G63400			Cyclophilin-like peptidyl-prol...		Lus10013111 [exp]	24.6	0.7293
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005141 [exp]	27.5	0.7192

Compare expression of checked genes

Lus10021124 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.