Plant FIBer expression Database

Lus10021125 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G01160 286 / 6e-92 RING/U-box superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017185
[exp]
627 / 0 AT5G01160 325 / 9e-109 RING/U-box superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G095600
[exp]
402 / 4e-135 AT5G01160 335 / 5e-112 RING/U-box superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10021125 pacid=23182285 polypeptide=Lus10021125 locus=Lus10021125.g ID=Lus10021125.BGIv1.0 annot-version=v1.0
ATGTTACGAATCCAGCTTAAGAAGCAGGCTTCTGATGTTGGAGGAGCGCCGATAAAGCCTCTTCCAGTGGAGACAGTCACCGTGGCTTGCCCTGACCACC
TTGTCCTTGCTGATCTTCCTGTAGCCAAGGGCATTGGAGCTTCCACCGCCGCTACCGTAGTTAAGAACATCGGTAGAAGGTCCCGACGCCAGCTGGGAGA
GCGAGTCCACTTCTGCGTTCGGTGTGATTTCCCGATCGCTATCTATGGACGCCTGAGCCCTTGTGAGCATGCCTTCTGCCTAGATTGTGCTAGGAGTGAT
TCAATCTGTTACTTTGGAAATGATTCCATGCTTTGGGATTCATGGCCAAATGGCACTCCCCGCCTAACTGGTGCATCTTGTCTTCTATTGAAAACCAGAT
GTGATGATCGTATACAGAAGATCCAGACGATAAAAATCATGGAGGGGCTTTTTATCTGTGCAGCCCCTCACTGTCTCAAGTCGTTCTTGAAGCGTACTGA
TTTTGAATCTCACATTCACCAGAGCCACGCAGACCTTCTACAGCCTAATGCAGACAAAGACAATGACAATGAATCAGAGGTCCAAAGTGCTAAACAACCT
GCACCGTCTGAGTCAACTGCCCGAGCACTCCCAAGATCCGGTTCGAATTCTCAGTTTCTGGACAATGAAGAGAAAGCGCGTAGGCAGCAACAACTACCGC
TTCAAAGACCAATGATGCCTAAGCCACCGTTTTATGGACAGGCCCCTCAAAATTACATGTCGGATCCACAGCTCGACGCCAATCGTCCTCCGGGTTTTGA
CCGCCCGGTCTTTCAGAACCGGTTCCAGCCGGGTGGTCCAGCCGGACAGGAATCCGGTCAGCAAGGAATGTCATCCGAGTCTGGAATGCCTGAATACCCT
GCAATGCAAGCTATGCAACAACAACAGCCAAACTTTCTCGTTCCGATGAATGCTACCCCGATGATGCCTCCCCAATTCGCACAACCATTCTACGGTGCGC
ATTTCGAGACGGGTCAGATGGGCCGGCAGGATACAGCGCCAGCAGAAGCTGGACAGGAACAAAGCTCCTTGCTGGGTTTCCCACCTGGCGGTATGAACTT
TATGGCGAATTATCCCCAGCCTTGGAACGTGATGTCGCCACAGGTAAGTCAGGGAACCGGAGAAGGATTCACAAACCTGGATCCGAGGGACGGGAAGGGG
ATATTGGCGGTGCCATCGCAGCAGCAGTCGTTTCTTCACCCTCCTCCGCCACCTCCGATTCCTCACCCCTCTACTCAGTCGAACCGAGGGAAGTATTATT
CGGGTGAAGGGAGCCATGACGGGCAAGGGTTTGGGTGGCAGCAGCAGGGCTTCCTCAATCACATCTCCTGCAATGGAGTGAAGGTTTTTGTTGAACATTC
TGAATCGTCTCCCCAATCAAACTATCAAAGGAAAACAAGAGAACCTTTCACTGACGATCTCCACGAAGCTCCCGCCCTTCGCAGTTGGCTTCTTAATCCT
CTCTCCCTCTCCATTCCGCTTCCCCCTTCTTTCAAGCCGCCGTCTCCTCCCTCCCCCCTCCTCCGTCCTTCCGCCGTCGAATCTCCTCACTATTTCAATA
TTCGAGCGGGTAATTTGGACGGATTTGATTGGTGA
AA sequence
>Lus10021125 pacid=23182285 polypeptide=Lus10021125 locus=Lus10021125.g ID=Lus10021125.BGIv1.0 annot-version=v1.0
MLRIQLKKQASDVGGAPIKPLPVETVTVACPDHLVLADLPVAKGIGASTAATVVKNIGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSD
SICYFGNDSMLWDSWPNGTPRLTGASCLLLKTRCDDRIQKIQTIKIMEGLFICAAPHCLKSFLKRTDFESHIHQSHADLLQPNADKDNDNESEVQSAKQP
APSESTARALPRSGSNSQFLDNEEKARRQQQLPLQRPMMPKPPFYGQAPQNYMSDPQLDANRPPGFDRPVFQNRFQPGGPAGQESGQQGMSSESGMPEYP
AMQAMQQQQPNFLVPMNATPMMPPQFAQPFYGAHFETGQMGRQDTAPAEAGQEQSSLLGFPPGGMNFMANYPQPWNVMSPQVSQGTGEGFTNLDPRDGKG
ILAVPSQQQSFLHPPPPPPIPHPSTQSNRGKYYSGEGSHDGQGFGWQQQGFLNHISCNGVKVFVEHSESSPQSNYQRKTREPFTDDLHEAPALRSWLLNP
LSLSIPLPPSFKPPSPPSPLLRPSAVESPHYFNIRAGNLDGFDW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G01160 RING/U-box superfamily protein... Lus10021125
[exp]
0 1
AT1G20200 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2... Lus10034469
[exp]
1.4 0.9442
AT1G11480 eukaryotic translation initiat... Lus10018497
[exp]
3.0 0.9400
AT1G27090 glycine-rich protein (.1) Lus10037224
[exp]
4.9 0.9461
AT3G02540 RAD23C, RAD23-3 RADIATION SENSITIVE23C, PUTATI... Lus10041464
[exp]
5.5 0.9259
AT1G12050 fumarylacetoacetase, putative ... Lus10010485
[exp]
5.7 0.9256
AT5G60700 glycosyltransferase family pro... Lus10037396
[exp]
7.1 0.9356
AT4G09980 EMB1691 EMBRYO DEFECTIVE 1691, Methylt... Lus10038853
[exp]
7.9 0.9308
AT5G52640 AtHsp90-1, ATHS... HEAT SHOCK PROTEIN 83, HEAT SH... Lus10038845
[exp]
8.1 0.9314
AT5G50740 Heavy metal transport/detoxifi... Lus10030514
[exp]
10.0 0.9388
AT1G54510 ATNEK1 NIMA-related serine/threonine ... Lus10000148
[exp]
11.4 0.9227

Lus10021125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.