Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38040 619 / 0 CAC3 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017184 [exp] 1162 / 0 AT2G38040 755 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G110500 [exp] 684 / 0 AT2G38040 890 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2) Potri.006G095800 [exp] 683 / 0 AT2G38040 870 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2) Potri.014G081000 [exp] 515 / 7e-173 AT2G38040 699 / 0.0 acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [flax] [poplar] ClpP_crotonase PF03255 [flax] [poplar] ACCA Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit
Representative CDS sequence Show only first row Show all	>Lus10021126 pacid=23182428 polypeptide=Lus10021126 locus=Lus10021126.g ID=Lus10021126.BGIv1.0 annot-version=v1.0 ATGGCTTCCATACCGTATTCTCCAGCCGCAGTAGCGGCGTCGGATCTTCTCCGGAGCTCAGGTGGTGGATTATCAAGTATCCCTCTGAGGACCCTAGGGG GATCGCAGTTTGGAGGTTCGACTTCCAGAGCTAGACATTTCTCCATCGTTGCTGCCAAGGGTCGGAGGATTAAGAAGCAGCGGGAGTATCCGTGGCCTCG TGGTGATCCGGATCCTAATGTGAAAGGAGGACTCCTTGCTCATCTCTCGCCTTTCAAGCCTCTGACAGTGAAGCCTAAGCCTGTCGTTCTGGAATTTGAG AAGCCGCTTATTGATCTCGAAAAGCAGATCAAGGATGTGAAGGAGATGGCAGGTGACACTGGTTTGGACTTCACCGATCAAATTGAACTGTTGGAGAATA AATATGAAGAGGCCCGGAAGAAGTTGTACACGAGCTTGACTCCGATACAAAGGGTGCATATTGCACGACATCCTCACAGGCCGACTTTCCTTGATCATAT CTTTAACATTACAGACACGTTTATAGAGCTTCACGGAGATCGAGCTGGTTATGATGATCCTGCTATTGTAACTGGGATAGGTAGCATTGATGGTCAAAGA TACATGTTCATTGGCCACCAAAAGGGTAGAAACACCAAAGAGAGTATTAAGCGCAACTTTGGAATGCCCACCCCTCATGGATACAGGAAGGCTCTTCGAA TGATGCACTACGCTGATCACCACGGCTTCCCTATTGTAACGTTTGTTGATACACCCGGAGCATTTGCAGACCTTAGGTCTGAGGAGCTCGGCCAAGGTGA AGCTATTGCTCAAAACTTGAGGACCATGTTTGGTCTAAAAGTACCGATTGTTTCAATTATTATTGGCGAGGGTGGCTCTGGTGGTGCCCTGGCCATAGCT TGTGCTAATTATTTGTTGATGCTTGAAAATTCAGTCTTCTATGTTGCCAGTCCAGAAGCATGTGCCGCAATTTTGTGGAAGAGTGCCAAAGCTGCCCCAA AGGCAGCACAGAAGTTAAAGATTACTGCTAAAGAATTGTGCAAGCTGCAAATTTGTGATGGGATAATTCCTGAGCCACTTGGGGGTGCACATGCAGATCC AGAATACACCTCGCAACAGCTAAAGGGTGCAATCAAGAAGGCTATGAATGAGCTCTCCAAGATGGATACAGACAAATTATTAAAGCACCGCAGTCATAAG TTCCGGAAAATTGGTAAAATCGACCCAAATGCGCCACTGCCCGAGAGGAAGAAGAAAGCCAAAAGGGCTTCGAAGGCCCGATTTGCTCAACTAGGGGATG AGGTCAAAGAGTTGAAACAGAAAATTTCCAAGGGGGGGAAATCTGCGATGCCCAGGTTAATTCCCGCCATTCCCGAGAAGACAGGATCGGTGGTAGAAAA ATTGTCCATGAATGACATGATAAAGAAACTGAGACGGGAGGTTGATCGTGAATTATCGGTAGCTCTTAAGGCAGTTGGCGTCGAGGACAAGATGTCATTG CTGAGGGATGAAATCAGGAAAGCGAACTCGCAAGGACAGCTCAACGATCCAAAGGTAACTGGCGAGATCGAAAAGCTTAAAAACGAACTCAGCCAGAGCC TTTCGGCTGCACCGAATCATGTCAAGCTCAAGACTAAGCTTGACAAGCTGGACGAGTTGGCTAAAGTCCAGAGTATGTCAGAGGAGAGGAAGAAGAATGC ACAGATGGTCAAGGAGCAAATGAACGAGAAGCTGAAAGAGATCATGGACCAACCCGAGAAAAAGGAGAAGGTAGAGAAATTGAAGGCCGAAATTGAAAAG GTGCGTGCTTCCGGCATTGAAAATGCTGACCAGAATACGAAAGATATGATTGCCAAGATGAAGCTGGATCTAGATAAAGAACTGGAAAAGGACCTCAAGT CGTTTGGGTTCAATCTAAAGGTTGTGAAGAAACCGAGTTTGGAAACCACAGTGAATGAAGTTCATGTTCCAGATGTGTATGAAAAGTTGAAATCCCTGGA GGAAGCAACGAAAAAGAAGATTGAGAATGCAGTCCAGTCGCCGGAGATAAAGAAACTGATCCGGATGCTGAAATGGGCTGTAGAAAAGGAAGGAAGCTCA CCGGACGAAACCGCCAAACGTAAAATCAAGGGTCTAGAAAAACTCATTAAGAAGAAAATGGCTCAAGCTGTGGACTCTCCTGATCTGAAGAAACAGCACC TCCAGCTTCCCGGAAAGGTTTCCGTAAAGTATGTTGGTGGATCATCGAATGGTAGTGTCGTCGAAACTGCTGCCGATCAGAACACCAATGGCGCACTCCC GTACGATCAGACAACCCCTTCGTATAATGACGAAACTAGGGTGGAGATTAGCTCCGGTGCAAACTGA
AA sequence Show only first row Show all	>Lus10021126 pacid=23182428 polypeptide=Lus10021126 locus=Lus10021126.g ID=Lus10021126.BGIv1.0 annot-version=v1.0 MASIPYSPAAVAASDLLRSSGGGLSSIPLRTLGGSQFGGSTSRARHFSIVAAKGRRIKKQREYPWPRGDPDPNVKGGLLAHLSPFKPLTVKPKPVVLEFE KPLIDLEKQIKDVKEMAGDTGLDFTDQIELLENKYEEARKKLYTSLTPIQRVHIARHPHRPTFLDHIFNITDTFIELHGDRAGYDDPAIVTGIGSIDGQR YMFIGHQKGRNTKESIKRNFGMPTPHGYRKALRMMHYADHHGFPIVTFVDTPGAFADLRSEELGQGEAIAQNLRTMFGLKVPIVSIIIGEGGSGGALAIA CANYLLMLENSVFYVASPEACAAILWKSAKAAPKAAQKLKITAKELCKLQICDGIIPEPLGGAHADPEYTSQQLKGAIKKAMNELSKMDTDKLLKHRSHK FRKIGKIDPNAPLPERKKKAKRASKARFAQLGDEVKELKQKISKGGKSAMPRLIPAIPEKTGSVVEKLSMNDMIKKLRREVDRELSVALKAVGVEDKMSL LRDEIRKANSQGQLNDPKVTGEIEKLKNELSQSLSAAPNHVKLKTKLDKLDELAKVQSMSEERKKNAQMVKEQMNEKLKEIMDQPEKKEKVEKLKAEIEK VRASGIENADQNTKDMIAKMKLDLDKELEKDLKSFGFNLKVVKKPSLETTVNEVHVPDVYEKLKSLEEATKKKIENAVQSPEIKKLIRMLKWAVEKEGSS PDETAKRKIKGLEKLIKKKMAQAVDSPDLKKQHLQLPGKVSVKYVGGSSNGSVVETAADQNTNGALPYDQTTPSYNDETRVEISSGAN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10021126 [exp]	0	1
AT2G05990		ENR1, MOD1	MOSAIC DEATH 1, ENOYL-ACP REDU...		Lus10021040 [exp]	1.4	0.9512
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Lus10006633 [exp]	2.8	0.9309
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042899 [exp]	3.2	0.9391
AT5G02970			alpha/beta-Hydrolases superfam...		Lus10026484 [exp]	4.0	0.9227
AT1G74960		ATKAS2, KAS2, F...	ARABIDOPSIS BETA-KETOACYL-ACP ...		Lus10034886 [exp]	4.7	0.9073
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Lus10042707 [exp]	5.7	0.9113
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10041971 [exp]	7.7	0.9344
AT1G24360			NAD(P)-binding Rossmann-fold s...		Lus10036980 [exp]	9.5	0.9233
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10017534 [exp]	11.2	0.9282
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	12.0	0.9286

Compare expression of checked genes

Lus10021126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.