Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38050 257 / 3e-87 DWF6, DET2, ATDET2 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT5G16010 79 / 7e-18 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT1G72590 71 / 1e-14 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT2G16530 66 / 8e-13 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) AT3G43840 46 / 5e-07 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) AT3G55360 46 / 3e-06 ECR, CER10, ATTSC13, TSC13 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008951 [exp] 76 / 2e-16 AT5G16010 272 / 4e-91 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10028869 [exp] 67 / 2e-14 AT5G16010 123 / 2e-35 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10042055 [exp] 66 / 6e-13 AT2G16530 347 / 8e-120 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10028371 [exp] 61 / 5e-11 AT2G16530 336 / 4e-115 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10001695 [exp] 52 / 7e-08 AT3G55360 540 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10005162 [exp] 51 / 7e-08 AT3G55360 541 / 0.0 ENOYL-COA REDUCTASE, ECERIFERUM 10, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10041820 [exp] 45 / 1e-05 AT2G16530 289 / 2e-96 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2) Lus10018059 [exp] 43 / 4e-05 AT1G72590 190 / 4e-60 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Lus10017183 [exp] 0 / 1 AT2G38050 138 / 2e-64 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G110600 [exp] 274 / 4e-94 AT2G38050 350 / 1e-122 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.005G047800 [exp] 262 / 2e-89 AT2G38050 295 / 8e-101 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.013G134433 [exp] 261 / 7e-89 AT2G38050 303 / 3e-104 DWARF 6, DE-ETIOLATED 2, 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245266 [exp] 82 / 5e-19 AT5G16010 291 / 2e-99 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012800 [exp] 80 / 3e-18 AT5G16010 266 / 3e-89 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245200 [exp] 80 / 4e-18 AT5G16010 295 / 9e-101 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G013100 [exp] 79 / 9e-18 AT5G16010 298 / 4e-102 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.008G012700 [exp] 78 / 1e-17 AT5G16010 278 / 2e-94 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.010G245332 [exp] 76 / 1e-16 AT5G16010 289 / 1e-98 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1) Potri.004G163600 [exp] 67 / 2e-13 AT2G16530 418 / 6e-147 3-oxo-5-alpha-steroid 4-dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0115 [flax] [poplar] Steroid_dh PF02544 [flax] [poplar] Steroid_dh 3-oxo-5-alpha-steroid 4-dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10021127 pacid=23182310 polypeptide=Lus10021127 locus=Lus10021127.g ID=Lus10021127.BGIv1.0 annot-version=v1.0 ATGTCACCTTTCCTCGTCCACTACTTCCACCGCACGTGCATCTACCCGCTCCGCCTCCACCTCCAATCATCCCCCTCCGCCGGGAAGAAGCCAGCTGGTT TTCCGGTGAGTATGGCGGCGATGGCGTTCGGATTCAACCTGCTGAACAGCTACCTACAGGCTCGATGGGTGTCGCACTACAAGACGGATTACGAGAGCGA CGGGGTTTGGTTCTGGGTGAAGTTTGGGCTTGCGGTGTTCGTTTGCGGGATGAGGATTAATATTTGGGCCGATCGGGTTTTGGTGGGCTTGAAGAAGGAA GGTGGCGGGTATAAGGTGCCCAGAGGCGGGTGGTTCGAGCTGGTTAGCTGCCCGAATTATTTAGGGGAGATTATGGAGTGGGCCGGTTGGACCGTGATGA GTTGGTCATGGGTTGGGTTGGGTTTTTTCTTGTACACGTGTGCGAACTTGGTGCCAAGGGCGCGTGCGAATCATAAGTGGTATTTGGGGAAGTTCGGAGA GGATTATCCCAAGAGTAGGAAAGCTGTGTTCCCTTACTTGTATTGA
AA sequence Show only first row Show all	>Lus10021127 pacid=23182310 polypeptide=Lus10021127 locus=Lus10021127.g ID=Lus10021127.BGIv1.0 annot-version=v1.0 MSPFLVHYFHRTCIYPLRLHLQSSPSAGKKPAGFPVSMAAMAFGFNLLNSYLQARWVSHYKTDYESDGVWFWVKFGLAVFVCGMRINIWADRVLVGLKKE GGGYKVPRGGWFELVSCPNYLGEIMEWAGWTVMSWSWVGLGFFLYTCANLVPRARANHKWYLGKFGEDYPKSRKAVFPYLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Lus10021127 [exp]	0	1
AT4G15248	CO		B-box type zinc finger family ...		Lus10039694 [exp]	4.0	0.9208
AT5G09800			ARM repeat superfamily protein...		Lus10006791 [exp]	4.5	0.9050
AT5G57360		LKP1, FKL2, ADO...	ZEITLUPE, LOV KELCH PROTEIN 1,...		Lus10025470 [exp]	6.9	0.9066
AT3G61770			Acid phosphatase/vanadium-depe...		Lus10030253 [exp]	7.7	0.8986
AT3G24500		MBF1C, ATMBF1C	multiprotein bridging factor 1...		Lus10034592 [exp]	7.7	0.9152
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10027290 [exp]	8.8	0.9026
AT5G03370			acylphosphatase family (.1)		Lus10013820 [exp]	9.2	0.8447
AT3G15040			Protein of unknown function, D...		Lus10029411 [exp]	9.4	0.8995
AT2G47180		ATGOLS1	galactinol synthase 1 (.1)		Lus10031434 [exp]	9.4	0.9023
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041393 [exp]	10.0	0.8792

Compare expression of checked genes

Lus10021127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.