Plant FIBer expression Database

Lus10021129 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G09080 47 / 5e-06 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017180
[exp]
202 / 8e-60 AT3G09080 608 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G096400
[exp]
73 / 6e-15 AT3G09080 617 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence
>Lus10021129 pacid=23182451 polypeptide=Lus10021129 locus=Lus10021129.g ID=Lus10021129.BGIv1.0 annot-version=v1.0
ATGAAGGCGAATCGCAGAGCCAAGAAGCCGGACGCCTCCTCGAAGAACCAGGACCAACAACATGTTGAATTGAAAGTCGTCTCCCCACTGACTCATAATG
GAGATGAATCTGAGCATATGTTCATTGAAGTCCAAACTCCTTCCATACTAGATGCATGTGGCAAAGAGTCGTCCTTTAATAGCTCAGATTCGGATTCTGC
TCGAACAAGTGAACGTGAAAGCAAGTCAATGACACGGAAGAATCTCAGTGATGAGCCAAGTGGTGACCAGCTACCTGAACAGTATTCGTTCAATTCCGGG
AACCGTGCTCAAGAGAACATACGAGCTGAAGAGAGTGAACTTTTCAAGCAGCATTTTGGTAGTTTATCAACAGCGAGCAAGATAGAAGGCTGTAAATCAT
CAGTGAGAAGAATTTACTCTGCAAGGTATGTCGTGCGGCGGGAATATCCTGGCGTTCCCCAGAAACTCTTTGCGACACCCATCCGTGATTCTGGTCGTAA
ACCATCAAATGCAAAGGTTACTGGAGAATTATCCATTCCTATTGACACGGAGAAACCAGTAATAGAGTATCTGAAAGAAGGTCAACAAAGAATTCCTTCC
ATGCAGGTCCTATCACACCTCTCTTCGCTCTTCATACAAAATTGA
AA sequence
>Lus10021129 pacid=23182451 polypeptide=Lus10021129 locus=Lus10021129.g ID=Lus10021129.BGIv1.0 annot-version=v1.0
MKANRRAKKPDASSKNQDQQHVELKVVSPLTHNGDESEHMFIEVQTPSILDACGKESSFNSSDSDSARTSERESKSMTRKNLSDEPSGDQLPEQYSFNSG
NRAQENIRAEESELFKQHFGSLSTASKIEGCKSSVRRIYSARYVVRREYPGVPQKLFATPIRDSGRKPSNAKVTGELSIPIDTEKPVIEYLKEGQQRIPS
MQVLSHLSSLFIQN

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G09080 Transducin/WD40 repeat-like su... Lus10021129
[exp]
0 1
AT5G53390 O-acyltransferase (WSD1-like) ... Lus10004008
[exp]
10.9 0.8698
AT5G19260 FAF3 FANTASTIC FOUR 3, Protein of u... Lus10042576
[exp]
15.7 0.8638
AT5G03790 HD LMI1, ATHB51 LATE MERISTEM IDENTITY1, homeo... Lus10035583
[exp]
16.6 0.8553
AT5G61850 LFY LFY3, LFY LEAFY 3, floral meristem ident... Lus10016732
[exp]
23.2 0.8528
AT1G51460 ABCG13 ATP-binding cassette G13, ABC-... Lus10000339
[exp]
24.7 0.8531
AT3G18990 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE... Lus10010759
[exp]
25.5 0.8527
AT1G78955 CAMS1 camelliol C synthase 1 (.1) Lus10026079
[exp]
26.3 0.8515
Lus10014738
[exp]
26.4 0.7502
AT3G52610 unknown protein Lus10022698
[exp]
27.4 0.8475
AT1G08465 YABBY YAB2 YABBY2, Plant-specific transcr... Lus10008374
[exp]
28.9 0.8450

Lus10021129 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.