Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36570 686 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 424 / 2e-139 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G26730 326 / 5e-102 Leucine-rich repeat protein kinase family protein (.1) AT4G23740 323 / 3e-101 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 321 / 2e-100 Leucine-rich repeat protein kinase family protein (.1.2) AT5G58300 318 / 4e-99 Leucine-rich repeat protein kinase family protein (.1.2) AT1G48480 305 / 4e-94 RKL1 receptor-like kinase 1 (.1) AT3G17840 296 / 1e-90 RLK902 receptor-like kinase 902 (.1) AT5G05160 292 / 3e-89 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT5G53320 279 / 9e-85 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017178 [exp] 982 / 0 AT2G36570 872 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035138 [exp] 362 / 8e-115 AT1G68400 746 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10021673 [exp] 336 / 8e-106 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 335 / 1e-105 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10017996 [exp] 330 / 2e-103 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1) Lus10032351 [exp] 327 / 2e-102 AT4G23740 802 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019113 [exp] 327 / 3e-102 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10002299 [exp] 309 / 1e-99 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10017756 [exp] 319 / 4e-99 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G117200 [exp] 768 / 0 AT2G36570 806 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G121700 [exp] 414 / 2e-135 AT1G68400 760 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G062100 [exp] 357 / 2e-113 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 340 / 2e-107 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G095200 [exp] 338 / 1e-106 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 337 / 3e-106 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 336 / 5e-106 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.018G074300 [exp] 337 / 6e-106 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 335 / 9e-106 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.015G035500 [exp] 324 / 3e-101 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10021131 pacid=23182398 polypeptide=Lus10021131 locus=Lus10021131.g ID=Lus10021131.BGIv1.0 annot-version=v1.0 ATGGAGAAGCCACTTCCGCTCTCCTTCTCTATCTTCTTCTTCTTCATCATCTCCACCGCCGCCGTTATCCCTTCACTTTCCGCTCTTCAACCCAACGACA CTGAAGCTCTGACTCTCTTCCGCCTCCAAACAGACTCCCACGGCAACCTCCGTTCAAACTGGACAGCTGGCACCCACCCCTGCTCTCCCTCTCCCTGGCT CGGCGTCAAATGCTCCCCCGTCGATGGCCGTGTCATCTCACTCTCCCTTCCTTCTCTCTCCCTCCGTGGCCCGATCGACTCCCTATCCTTCCTCGACCAG CTCCGACTCCTCGACCTCCATGACAACCGTCTCAACGGCACACTTTCCCCTCTCTCCAACTGCTCCAACCTCAAACTCCTTTACCTCGCCGGAAATGACT TCTCCGGCGAGATCCCACCGCAGATCACCTCTCTCCACCGCCTCCTCCGCCTGGACTTGTCGGACAACAACATCCGTGGCGAAATTCCTCCCGGATTGGC CAATTTGACCAAACTCCTCACCCTCCGATTGGAAAACAACGAACTCTCCGGCCAAATCCCCGATCTCTCCGCTTCAATTCCCAATCTAAAGGAGCTGAAT CTCTCAAACAATGAGCTGTACGGTCGTGTACCGGATTATATCGGGAAGAAATTCGGGTACCATAGCCTTACCGGAAACCAAGGGCTTTGCGGATTTACTC CGTTTCCCATTTGCTCGAAATTCATTCCAGGTCCGGGAGACGTTACCGTTCCTTCTAACCCTAGCTCGATAATGCCGCAATCTCCTATCGTCGAGAGCCG GAGCTCTGATCCGCCTCGCCGGCATAGAGGATTGAGCACCGGAGCGACGGTGGCGATCATAATCGTCATCTGCGTGATGTTTCTTGTGGTGGCTTCGTTT ACGGTAGCCTACTGCTGCGGCGGAGACAGAGGCGGCGCTGCGAGCTCCAAAGTCGGGAGCGAGACTGGCAGCGCCGGTAAGAGGCGGAGGAGTGGGAGCA GCACCGTTGTCGGCGGTGGTGGTGGGGACAGCGACGGTACGAACACGACGGACAGGAGCAAGCTGGTGTTCTACGACAGGAAGAATCAGTTCGAATTGGA GGATTTGTTGAGAGCGTCGGCGGAGATGCTTGGGAAGGGTAGTTTGGGGACGGTTTACAGGGCGGCGCTCGACGATGGATGTACGGTGGCGGTGAAGCGG CTGAAAGATGCGAATCCGTGTGCGAGGAAGGAGTTCGAGCAGTACATGGAAGTGATCGGGAAGCTGAAACATCCCAACATTGTGAGGTTCAAAGCTTACT ACTATGCTAAAGAGGAGAAGTTGCTCGTCTACGTTGCTAAAGAGGAGAAGTTACTGGTCTACGACTATCTCCCCAACGGCAGCCTCCATTGGCTTCTCCA TGGAAACAGGGGACCGGGAAGGATTCCACTAGACTGGACGACTCGGATAAGTTTGGTACTCGGAGCAGCTCGCGGGTTAGCCAAGATACACGACGAATAC AGGTCAGCTCGAATCCCACACGGCAACATCAAATCCTCCAACGTCCTACTAGACAAAAACGGCGTCGCTTGCATAGCTGACTTCGGCCTGTCCTTGCTCC TGAACCCGGTTCACGCCATCGCCAGAATCGGCGGGTACAGAGCGCCGGAGCAGGTGGAAACAAAAAGACTCTCCCAGAACGCTGACGTGTACAGCTTCGG AGTCCTCCTTCTAGAAGTTCTCACCGGCCAAGCTCCTTCCCAGTCTCATCGCCATCACCATCATAATCAGTACTCAATTTCTCCCTCACCGGTGGAAGAG GAGGAGGAGCAGTCGGCGGCGGCGGCGGACCTTCCGAAGTGGGTGAGGTCGGTGGTGAAGGAAGAATGGACGGCGGAGGTGTTCGATCAGGAGCTTCTTA GGTACAAGAACATCGAGGAGGAGCTTGTGTCGATGTTACACGTGGCGCTGGCGTGCGTTGGTCCGGCGCCGGAGAAGAGGCCGGGAATGGGGGATGTGGT GAGGATGATTGAAGAGATTCGGGTGGAGCAGTCGCCGTTGGGTGAGGATTACGATGAGTCGCGTAATTCCATGTCGCCGTCGCTTGCCACCACCGAAGAC TGA
AA sequence Show only first row Show all	>Lus10021131 pacid=23182398 polypeptide=Lus10021131 locus=Lus10021131.g ID=Lus10021131.BGIv1.0 annot-version=v1.0 MEKPLPLSFSIFFFFIISTAAVIPSLSALQPNDTEALTLFRLQTDSHGNLRSNWTAGTHPCSPSPWLGVKCSPVDGRVISLSLPSLSLRGPIDSLSFLDQ LRLLDLHDNRLNGTLSPLSNCSNLKLLYLAGNDFSGEIPPQITSLHRLLRLDLSDNNIRGEIPPGLANLTKLLTLRLENNELSGQIPDLSASIPNLKELN LSNNELYGRVPDYIGKKFGYHSLTGNQGLCGFTPFPICSKFIPGPGDVTVPSNPSSIMPQSPIVESRSSDPPRRHRGLSTGATVAIIIVICVMFLVVASF TVAYCCGGDRGGAASSKVGSETGSAGKRRRSGSSTVVGGGGGDSDGTNTTDRSKLVFYDRKNQFELEDLLRASAEMLGKGSLGTVYRAALDDGCTVAVKR LKDANPCARKEFEQYMEVIGKLKHPNIVRFKAYYYAKEEKLLVYVAKEEKLLVYDYLPNGSLHWLLHGNRGPGRIPLDWTTRISLVLGAARGLAKIHDEY RSARIPHGNIKSSNVLLDKNGVACIADFGLSLLLNPVHAIARIGGYRAPEQVETKRLSQNADVYSFGVLLLEVLTGQAPSQSHRHHHHNQYSISPSPVEE EEEQSAAAADLPKWVRSVVKEEWTAEVFDQELLRYKNIEEELVSMLHVALACVGPAPEKRPGMGDVVRMIEEIRVEQSPLGEDYDESRNSMSPSLATTED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36570			Leucine-rich repeat protein ki...		Lus10021131 [exp]	0	1
AT3G52500			Eukaryotic aspartyl protease f...		Lus10013325 [exp]	1.4	0.8865
AT2G01610			Plant invertase/pectin methyle...		Lus10038645 [exp]	6.6	0.8942
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Lus10038726 [exp]	7.4	0.8749
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Lus10018726 [exp]	14.5	0.8791
AT2G34700			Pollen Ole e 1 allergen and ex...		Lus10014013 [exp]	15.9	0.8731
AT2G36570			Leucine-rich repeat protein ki...		Lus10017178 [exp]	20.0	0.8505
AT2G47590		PHR2	photolyase/blue-light receptor...		Lus10007880 [exp]	20.4	0.8390
AT3G54260		TBL36	TRICHOME BIREFRINGENCE-LIKE 36...		Lus10014358 [exp]	20.6	0.8624
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10014033 [exp]	23.0	0.8702
AT2G33850			unknown protein		Lus10015406 [exp]	24.5	0.8487

Compare expression of checked genes

Lus10021131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.