Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54140 788 / 0 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G01180 776 / 0 ATPTR5 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) AT2G02040 682 / 0 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT1G62200 627 / 0 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT2G02020 564 / 0 AtPTR4 peptide transporter 4, Major facilitator superfamily protein (.1.2) AT1G68570 482 / 6e-165 Major facilitator superfamily protein (.1) AT4G21680 466 / 1e-158 NRT1.8 NITRATE TRANSPORTER 1.8 (.1) AT2G40460 462 / 4e-157 Major facilitator superfamily protein (.1) AT5G46040 447 / 2e-151 Major facilitator superfamily protein (.1) AT1G32450 446 / 1e-150 NRT1.5 nitrate transporter 1.5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018207 [exp] 791 / 0 AT5G01180 818 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10035516 [exp] 775 / 0 AT5G01180 913 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10040698 [exp] 696 / 0 AT5G01180 709 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 5, peptide transporter 5 (.1) Lus10040099 [exp] 677 / 0 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10030947 [exp] 676 / 0 AT2G02040 884 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011055 [exp] 673 / 0 AT2G02040 847 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10000670 [exp] 665 / 0 AT2G02040 849 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10040100 [exp] 622 / 0 AT2G02040 835 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Lus10011786 [exp] 509 / 4e-175 AT5G46050 831 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G111900 [exp] 927 / 0 AT3G54140 798 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 820 / 0 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.001G248600 [exp] 807 / 0 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.016G111800 [exp] 789 / 0 AT3G54140 893 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G096800 [exp] 777 / 0 AT3G54140 896 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.010G100200 [exp] 698 / 0 AT2G02040 897 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.011G120000 [exp] 646 / 0 AT2G02040 809 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) Potri.002G029200 [exp] 491 / 2e-168 AT3G54140 496 / 3e-170 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.008G170100 [exp] 491 / 2e-168 AT5G46050 816 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 3, peptide transporter 3 (.1) Potri.005G233500 [exp] 489 / 3e-167 AT3G54140 498 / 6e-171 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10021132 pacid=23182390 polypeptide=Lus10021132 locus=Lus10021132.g ID=Lus10021132.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAAGACACCTTATTGTACACCAAAGATGGAACCACTGATTTCCACGGGAATCCTGCCGTCAAGAAGAACACAGGAACCTGGAAAGCTTGCC CCTATATTCTTGGAAACGAATGCTGCGAAAGGTTAGCATACTACGGAATCAACACCAACCTTGTGAACTATCTCAAGTTCCAGATGAACCAGCGTAACGT TGTGGCGGTCAACAACGTTACGAACTGGTCGGGAACTTGTTACGTCATGCCGTTGCTCGGAGCGTTCCTCGCCGACGCGTACTTGGGGAGATACTGGACT ATTGCCACCTTCTCCATCATCTACGTCTTCGGGATGACTCTGTTAACAATGTCGGCATCTCTCCACGCCCTGAAACCAACCTGCAACTCCTCCACAAACG TCTGCCACCCCACACCCTCCCAAACCTCAGTCTTCTTCCTAGGGCTCTACCTAATCGCATTAGGAACTGGAGGGATCAAGCCGTGCGTATCATCATTTGG GGCGGACCAATTCGACGATTCCGACGCGGAAGAGAAGAAAAAAAAAGGTTCATTCTTCAATTGGTTCTATTTCTCGATCAACATTGGAGCTCTGGTGGCT TCTTCGGTCCTGGTGTGGGTCCAGACGAACGTCGGATGGGGCTGGGGGTTTGGGATCCCGGCGACGGCGATGGCTGTCGCCGTGTTCAGCTTCTTTTCCG GTACGAGGCTGTACAGACATCAGATTCCTGGTGGGAGTCCGGTGACGAGAATTTGTCAGGTGATTGTTGCGTCGTTAAGGAAATTGAAGATCGAGGTTCC CAGTGATAAGGGGCTTCTGTTTGAGACGGATAGGGATTCTGAATCTGCTGTAAGAGGTAGCCGTAAGCTCGATCACACTGACCAATTGAATTTCTTCGAC AAGGCGGCGGTGGAGACCCAATCCGACCGAATCAAACCCGGCCCGAACCCATGGCGACTCTGCACCGTGACCCAAGTCGAAGAGCTCAAATCAATCATCC GCCTCCTCCCAATCTGGGCAACGGGAATAATCTTCTCCGCCGTCTACAGCCAAATGGGCACTCTATTCGTCCTCCAGGGCAACACAATGGACCTCCACAT CACCAAATCCTTCCAGATCCCATCAGCTTCCCTCTCCCTGTTCGACACAGTCAGCGTGATCCTCTGGGTCCCACTATACGATCGCGCCATCGTCCCTCTC GCCAGAAAATTCATCACCGGCCGTCCAAACGGGTTCACCCAGCTCCAACGGATCGCAATCGGGCTCGTAATCTCGATCTTCGCAATGTTGGCTGCCGGAA CGCTGGAGCTTTTCCGGTTAAGGGAAGTGAGGAGGAACGATTGGTTCGAGACGAAGCACGTCCCGATTTCGGTGTTCTGGCAGGTGCCTCAGTATTTCAT AATCGGGTGCGCTGAGGTGTTCACGTTTATTGGGCAGTTGGAGTTTTTCTACGAGCAGGCGCCTGATGCTATGAGGAGTCTCTGTTCGGCTCTATCGCTG ACGACTGCTGCGTTGGGGAACTATCTGAGTACGTTTCTGGTGAATGTGGTGACGGATTTGAGTAGTGGCGAGAATGGTGGAGGATGGATTCCTGATAATT TGAACTACGGGCGTCTTGATTGTTTCTTCTGGCTTCTTGCTGGGTTGAGTGTAGCGAATTTGGGGTTTTATGTATTGGTTGCTAGGTGGTACACTTACAA GAAGCCTACTGCTCAATCTGAGGACTGA
AA sequence Show only first row Show all	>Lus10021132 pacid=23182390 polypeptide=Lus10021132 locus=Lus10021132.g ID=Lus10021132.BGIv1.0 annot-version=v1.0 MAEEDTLLYTKDGTTDFHGNPAVKKNTGTWKACPYILGNECCERLAYYGINTNLVNYLKFQMNQRNVVAVNNVTNWSGTCYVMPLLGAFLADAYLGRYWT IATFSIIYVFGMTLLTMSASLHALKPTCNSSTNVCHPTPSQTSVFFLGLYLIALGTGGIKPCVSSFGADQFDDSDAEEKKKKGSFFNWFYFSINIGALVA SSVLVWVQTNVGWGWGFGIPATAMAVAVFSFFSGTRLYRHQIPGGSPVTRICQVIVASLRKLKIEVPSDKGLLFETDRDSESAVRGSRKLDHTDQLNFFD KAAVETQSDRIKPGPNPWRLCTVTQVEELKSIIRLLPIWATGIIFSAVYSQMGTLFVLQGNTMDLHITKSFQIPSASLSLFDTVSVILWVPLYDRAIVPL ARKFITGRPNGFTQLQRIAIGLVISIFAMLAAGTLELFRLREVRRNDWFETKHVPISVFWQVPQYFIIGCAEVFTFIGQLEFFYEQAPDAMRSLCSALSL TTAALGNYLSTFLVNVVTDLSSGENGGGWIPDNLNYGRLDCFFWLLAGLSVANLGFYVLVARWYTYKKPTAQSED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54140		ATPTR1	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10021132 [exp]	0	1
AT1G50270			Pentatricopeptide repeat (PPR)...		Lus10017351 [exp]	3.0	0.8621
AT3G25670			Leucine-rich repeat (LRR) fami...		Lus10027239 [exp]	3.7	0.9059
					Lus10029057 [exp]	4.2	0.8850
AT1G70790			Calcium-dependent lipid-bindin...		Lus10034591 [exp]	6.6	0.8171
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10042835 [exp]	13.0	0.8605
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10002525 [exp]	14.0	0.8902
AT5G66870	AS2	LBD36, ASL1	LATERAL ORGAN BOUNDARIES DOMAI...		Lus10009336 [exp]	17.5	0.8566
AT4G33800			unknown protein		Lus10006135 [exp]	19.1	0.8761
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10010361 [exp]	20.3	0.8639
AT1G51460		ABCG13	ATP-binding cassette G13, ABC-...		Lus10000339 [exp]	21.8	0.8828

Compare expression of checked genes

Lus10021132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.