Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20780 187 / 2e-60 CML42 calmodulin like 42 (.1) AT5G44460 171 / 3e-54 CML43 calmodulin like 43 (.1) AT1G05990 86 / 2e-21 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT2G43290 85 / 3e-20 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT4G03290 81 / 2e-19 EF hand calcium-binding protein family (.1) AT3G59440 82 / 4e-19 Calcium-binding EF-hand family protein (.1) AT3G07490 73 / 3e-16 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1) AT4G12860 71 / 1e-15 UNE14 unfertilized embryo sac 14, EF hand calcium-binding protein family (.1) AT1G21550 70 / 4e-15 Calcium-binding EF-hand family protein (.1) AT4G14640 69 / 6e-15 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017174 [exp] 295 / 1e-102 AT4G20780 234 / 4e-79 calmodulin like 42 (.1) Lus10003239 [exp] 207 / 6e-68 AT4G20780 249 / 5e-85 calmodulin like 42 (.1) Lus10035611 [exp] 200 / 3e-65 AT4G20780 242 / 3e-82 calmodulin like 42 (.1) Lus10000972 [exp] 84 / 3e-20 AT1G21550 128 / 3e-38 Calcium-binding EF-hand family protein (.1) Lus10027701 [exp] 84 / 7e-20 AT2G43290 153 / 2e-46 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Lus10006644 [exp] 79 / 7e-18 AT3G07490 148 / 3e-45 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10009564 [exp] 76 / 1e-17 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10038088 [exp] 76 / 1e-16 AT3G07490 150 / 7e-46 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10028657 [exp] 73 / 7e-16 AT1G21550 122 / 9e-36 Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G142000 [exp] 197 / 4e-64 AT4G20780 197 / 3e-64 calmodulin like 42 (.1) Potri.006G112500 [exp] 190 / 2e-61 AT4G20780 238 / 2e-80 calmodulin like 42 (.1) Potri.017G029700 [exp] 82 / 3e-19 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.005G183300 [exp] 79 / 1e-18 AT1G21550 136 / 1e-41 Calcium-binding EF-hand family protein (.1) Potri.002G077300 [exp] 79 / 2e-18 AT1G21550 123 / 3e-36 Calcium-binding EF-hand family protein (.1) Potri.002G239100 [exp] 77 / 5e-18 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 79 / 6e-18 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.018G127100 [exp] 79 / 1e-17 AT3G07490 132 / 6e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.006G065900 [exp] 77 / 2e-17 AT3G07490 131 / 1e-38 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G042900 [exp] 77 / 3e-17 AT2G15680 169 / 1e-53 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10021134 pacid=23182366 polypeptide=Lus10021134 locus=Lus10021134.g ID=Lus10021134.BGIv1.0 annot-version=v1.0 ATGGAGGATTCGTCAGAACAAGTCGGAGCCGAAGTCGGCGGGAGGTTGAAGAAGAACTGCTCGCCGTCGTTCCGGCTAAGATCCCCAAGCCTAAACTCCC TTCGCCTTCGCCGCATCTTCGACCTCTTCGACAAGAACGGCGACGGGATGATAACGGTCCAGGACCTGAGCCAGGCGCTGAGCCTATTGGGCCTGGAAGC CGACATCTCGGAGTTGGAATCCACGATCCAAGCCCACATAAAGCCCGACAACCTTGGGCTCGAGTTCGAGGACTTCGTCTCCCTCCATCACTCCCTCGGC GACGCGATGTTCGGCGGCGAGAGCCAGATGCAATTCCAGCAGCAGGACGAGGACGAGTCGCTGAGCCAGGAGGAGTCGGATCTGGCGGAGGCGTTCAAGG TGTTTGACGAAGACGGCGACGGTTACATCTCCGCGCGTGAGCTGCAGGTGGTGTTGCAGAAGCTGGGCTTGCCGGAGGCGACGGAGATGGATAGGGTGGA GCAGATGATTCTGTCGGTTGACCAGAATAAAGACGGCAGGGTTGACTTTTCTGAGTTTAAACATATGATGCGCTCTTCGCTGCTACTCCTCCCTAACCCG AATTCTACTTCTGCATAA
AA sequence Show only first row Show all	>Lus10021134 pacid=23182366 polypeptide=Lus10021134 locus=Lus10021134.g ID=Lus10021134.BGIv1.0 annot-version=v1.0 MEDSSEQVGAEVGGRLKKNCSPSFRLRSPSLNSLRLRRIFDLFDKNGDGMITVQDLSQALSLLGLEADISELESTIQAHIKPDNLGLEFEDFVSLHHSLG DAMFGGESQMQFQQQDEDESLSQEESDLAEAFKVFDEDGDGYISARELQVVLQKLGLPEATEMDRVEQMILSVDQNKDGRVDFSEFKHMMRSSLLLLPNP NSTSA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20780		CML42	calmodulin like 42 (.1)		Lus10021134 [exp]	0	1
AT5G20700			Protein of unknown function (D...		Lus10022948 [exp]	5.2	0.7297
AT3G57450			unknown protein		Lus10019730 [exp]	8.2	0.6953
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10009053 [exp]	20.8	0.6756
AT3G10300			Calcium-binding EF-hand family...		Lus10035435 [exp]	24.1	0.7183
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10028546 [exp]	29.1	0.6571
AT1G36320			unknown protein		Lus10036666 [exp]	35.7	0.6291
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10024861 [exp]	37.1	0.6396
AT1G13340			Regulator of Vps4 activity in ...		Lus10034303 [exp]	37.4	0.6568
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10018009 [exp]	41.8	0.6786
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Lus10042874 [exp]	42.3	0.6746

Compare expression of checked genes

Lus10021134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.