Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52970 613 / 0 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT2G45570 382 / 2e-127 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT2G45560 373 / 3e-124 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45550 372 / 7e-124 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G33720 357 / 3e-118 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45580 342 / 7e-112 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT3G61040 338 / 6e-111 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT5G07990 322 / 2e-104 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT5G44620 316 / 5e-102 CYP706A3 "cytochrome P450, family 706, subfamily A, polypeptide 3", cytochrome P450, family 706, subfamily A, polypeptide 3 (.1) AT4G12300 305 / 7e-98 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029930 [exp] 657 / 0 AT3G52970 557 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10021136 [exp] 448 / 2e-153 AT3G52970 436 / 5e-149 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10025749 [exp] 440 / 2e-150 AT3G52970 441 / 9e-151 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10002839 [exp] 382 / 9e-128 AT3G52970 390 / 4e-131 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10021137 [exp] 375 / 4e-125 AT3G52970 387 / 6e-130 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10008936 [exp] 359 / 6e-119 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028897 [exp] 356 / 2e-117 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008935 [exp] 352 / 3e-116 AT2G45550 476 / 5e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028852 [exp] 350 / 2e-115 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G029800 [exp] 699 / 0 AT3G52970 626 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G030100 [exp] 691 / 0 AT3G52970 617 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029700 [exp] 685 / 0 AT3G52970 612 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029200 [exp] 684 / 0 AT3G52970 615 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029600 [exp] 679 / 0 AT3G52970 609 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.006G094700 [exp] 468 / 3e-161 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.003G118200 [exp] 394 / 1e-132 AT2G45550 438 / 9e-150 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 367 / 5e-122 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 359 / 4e-119 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 353 / 9e-117 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10021135 pacid=23182298 polypeptide=Lus10021135 locus=Lus10021135.g ID=Lus10021135.BGIv1.0 annot-version=v1.0 ATGGACTATGAAATTTCCGTAATAGCTCTTCTGCTTCTTTTATGGGTTACCTGGGCAATCACGACGGAGCGTCAGCACCGCCGTTCGGAACAGCGGGGCC GGCTACCGCCCGGCCCAACCCCGTTGCCGATCGTCGGCAACATATTCAATTTGGGCTGGGCCCCACACGAGTCTTTCATCCAGCTATGCAAGGCCCACGG CCCAATCATGACCCTCTACCTGGGGTCCATGTGCACGGTGGTGATCTCCTCCAAAGAAGCGGCCCGGACAATGTTCAAGAGCTACGACACCGTTTTCGCC GGCAGAAAAATCTACGAGTCTATGAAGGGCCCCAGCGGCAAGAGCAACGACGGCTCCATCATCACGGCGCAGTACGGGCCCCACTGGCGGATGCTGCGGC GGCTGAGCACGGCGGAGTTCTTCGTCTCGCACAAGCTGGACGCCACGAGGGAAGTCCGGAGCCGGTGCGTGGATCGGATGGTCCGGTTTGTGGACGAAGC CGGGTGCGGAGGGACCCAACCCGTGGACCTGGGCCGGTTCGTTTTCCTGATGGCGTTTAACCTGATAGGGAATATGATGCTTTCTCGAGACTTGCTGGAT CCGAAATCTGAGGAGAGGGCGATGTTCTTGTACCATGCGGGGAAAGTTATGGAGTTCGCCGGAAAACCCAACGTGGCGGATTTCTTCCCGTTGCTGAGGT GGCTGGATCCGCAGAGGATTAGGAAGAACACGCAGTTCCACGTGGAGAAGGCGTTCGAAATTGCGGGAGAGTTCATTCAGGAGAGGTTAGTGAAGATCCA GCTGGCAAGCGACAGTGGCAGTCGTGTAAATTGTGATGATGATGAGAGGAAAATGGACTTTCTGGATGTGCTGTTGGGATTTCGAGGGGTGGGAGTCGAT GAGCCGTCAAAGTTCACTCCCAGGACGATCAACGTCATCGTCTTCGAGATGTTCACGGCAGGGACGGACACAACTACGAGCACATTGGAATGGGCGATGG CGGAACTACTCCACAATCCAGAAAAGCTACACAAAGTCCAGGCAGAGCTAAACGCCGTAGTCGGTGCCGGCAAGAAGCTTGAAGAAGAAGACATCAGAAA CCTCCCTTACCTGAAAGCCGTTATCAACGAAACTCTACGGCTCCACCCGCCGCTTCCTTTCTTAGTCCCGCACATGGCCATGCAGCCATGCAAAATGCTG GGTTACTACATCCCGAAAGAGACCCAGATTCTTGTCAACGTCTGGGGGATCGGAAGGGACCCGGACACGTGGAAGGACCCGCTGGAGTTCAAACCCGAGA GGTTTCTTGACCCGGACGCAGTGGATTACAAGGGGCATCATTTCGAGTTCATGCCGTTTGGGTCGGGCCGGAGGATGTGCCCGGCATTGCCTTTAGCTTC ACGGGTTCTGCCGCTTGCTTTGGGCTCGTTGTTGCATGAGTTTGGATGGTCGTTGCCTGATGGGCTTAAGGCCCAACATCTGGATATGAGGGAGAGGATG GGGATTACACTTAGGAAAGCTGTTCCGTTGGAGGTGATTCCAATCAGGAGGCACTGCTAA
AA sequence Show only first row Show all	>Lus10021135 pacid=23182298 polypeptide=Lus10021135 locus=Lus10021135.g ID=Lus10021135.BGIv1.0 annot-version=v1.0 MDYEISVIALLLLLWVTWAITTERQHRRSEQRGRLPPGPTPLPIVGNIFNLGWAPHESFIQLCKAHGPIMTLYLGSMCTVVISSKEAARTMFKSYDTVFA GRKIYESMKGPSGKSNDGSIITAQYGPHWRMLRRLSTAEFFVSHKLDATREVRSRCVDRMVRFVDEAGCGGTQPVDLGRFVFLMAFNLIGNMMLSRDLLD PKSEERAMFLYHAGKVMEFAGKPNVADFFPLLRWLDPQRIRKNTQFHVEKAFEIAGEFIQERLVKIQLASDSGSRVNCDDDERKMDFLDVLLGFRGVGVD EPSKFTPRTINVIVFEMFTAGTDTTTSTLEWAMAELLHNPEKLHKVQAELNAVVGAGKKLEEEDIRNLPYLKAVINETLRLHPPLPFLVPHMAMQPCKML GYYIPKETQILVNVWGIGRDPDTWKDPLEFKPERFLDPDAVDYKGHHFEFMPFGSGRRMCPALPLASRVLPLALGSLLHEFGWSLPDGLKAQHLDMRERM GITLRKAVPLEVIPIRRHC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021135 [exp]	0	1
					Lus10041915 [exp]	2.0	0.9391
AT4G10350	NAC	BRN2, NST4, ANA...	BEARSKIN 2, NAC domain contain...		Lus10039153 [exp]	3.2	0.9578
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10012817 [exp]	3.5	0.9367
AT1G31710			Copper amine oxidase family pr...		Lus10013355 [exp]	5.5	0.9478
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10000973 [exp]	6.9	0.9183
AT3G50610			unknown protein		Lus10009346 [exp]	9.6	0.8917
AT1G31690			Copper amine oxidase family pr...		Lus10013356 [exp]	12.4	0.9353
					Lus10041974 [exp]	13.0	0.8705
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10001869 [exp]	14.4	0.9326
AT5G46490			Disease resistance protein (TI...		Lus10042465 [exp]	14.5	0.8651

Compare expression of checked genes

Lus10021135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.