Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52970 408 / 7e-138 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT2G45560 374 / 9e-125 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT2G45550 372 / 9e-124 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT1G33720 358 / 2e-118 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45570 351 / 1e-115 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G61040 342 / 4e-112 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT5G07990 335 / 3e-109 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45580 334 / 4e-109 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT4G12300 302 / 9e-97 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT4G12320 302 / 1e-96 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025749 [exp] 934 / 0 AT3G52970 441 / 9e-151 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10002839 [exp] 628 / 0 AT3G52970 390 / 4e-131 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10021137 [exp] 623 / 0 AT3G52970 387 / 6e-130 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10021135 [exp] 416 / 4e-141 AT3G52970 634 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10029930 [exp] 395 / 1e-132 AT3G52970 557 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10028898 [exp] 369 / 8e-123 AT2G45550 488 / 1e-169 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008936 [exp] 365 / 3e-121 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028852 [exp] 360 / 2e-119 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008918 [exp] 360 / 3e-119 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G094700 [exp] 669 / 0 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G030100 [exp] 406 / 5e-137 AT3G52970 617 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029800 [exp] 405 / 3e-136 AT3G52970 626 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029600 [exp] 399 / 1e-134 AT3G52970 609 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029200 [exp] 399 / 2e-134 AT3G52970 615 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029700 [exp] 398 / 5e-134 AT3G52970 612 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.002G150100 [exp] 392 / 8e-132 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 385 / 3e-129 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 379 / 9e-127 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 379 / 1e-126 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10021136 pacid=23182408 polypeptide=Lus10021136 locus=Lus10021136.g ID=Lus10021136.BGIv1.0 annot-version=v1.0 ATGGCGGCCGTTGACATTTTCTCATCTTCCTCAACAAATCCCACACTGGTAATACTAATAGCAACCATAATCCCTCTCCTCCTCCTAACTAAAACCTTCC TCCGCAGCCGAGGCCGCCACGTCACAAACTTCCCACCGGGGCCACCGGGATGGCCGGTGATCGGCAACCTACTAGACCTCGGCAAAATGCCACACCGTAC ACTCACCCAAATGAGGAACACGTACGGCGACGTTGTCTACCTCCGACTAGGCGCGATGAAGACCATGGCCATCCTTTCGACCAAGGCTGCGTCGGAGTTC TTCAAGAACCACGACCTCGACTTTGCCGACCGAACCGTCACCGAGATCATGAAGGTCCACGGCTACGACAAAGGGTCCATGGTACTAGCGCCTTACGGAC CCTACTGGCGCGTGCTCCGCAAACTCGTGACGGTCGACATGATGGTGGCCAAACGGATCAACGGCAGCTACGGCGTCAGGAGGAAGTGCGTTGACAATAT GATCCGGTGGGTCGGGGAGGAGTCTGGGTCCGGATCGGAGATCGAGGTGGCACGGTTCGTATTCCTGACGACGTTTAACCTGCTGGGGAACTTGATGCTG TCCAAGGACTTGTTGGATTCGAAGTCCGCGGAAGGGAAGGAGTTCTTCACGGCGATGATGGGGTTGATGGAGTGGGGCGGCCATGCCAACGTGGCGGATA TTTTCCCATGGTTGAAGTCGTTGGACCCACAGGGTTTGTGTCGGAAAATGCGGAGGGATCTTGGGAAAGCTATGGAAATTGCTTCAAAGTTCGTTAACGA GAGGGTTGCAGAAGAAGAAGGTGGGACGACTAAGAGTAAGAATGATTTTTTAGATGTGTTGCTTGAGTTTGAAGGTAATGGGAAGGATGAGCCCGAAAAG ATCTCTCACCGCGACATCAACATTTTCATACTCGAAATTTTCTTGGCGGGATCGGAGACCACGAGCAGCACGACGGAGTGGGCACTAACGGAGCTCCTCC GCCACCCGGAATCAATGACCAAACTCGAAACCGAACTCAAAACCGTAATCGGGCCAAACCGGAAAGTAGAAGAGAGCGACATCGACAACCTCCCATTCCT ACAAGCAGTAGTAAAGGAAACTTTCCGATTACACCCACCGATCCCTCTCCTGGTACCCCGGCGGGCTCTGCGGGACACGATTTTCATGGGCTATACAATT CCCAAAGACACCCAGGTTCTAGTCAACGGCTGGTCAATCGGGCGGGACCCGGACCAGTGGGAGGATCCAGGGAGCTTCAAACCCGAGAGGTTTTTGGACT CCAAAGTTGATTACAGGGGTCAGCATTACCAGCTCATGCCGTTCGGCGCCGGAAGGAGGATATGCGCCGGCGTGCCGTTGGCGCACCGGGTGGTTCACTT GATACTCGGCACTCTGATTCACGAGTTTGGATGGGAGAGTAAAGTGGACCCCGGGAGTTTTGATATGGATGATAGGTTGGGGATTACGATGAGGAAGTCG GAGTCGTTGATGGTGGTGCCGAAGAAGAAGGAAAACGTGTAA
AA sequence Show only first row Show all	>Lus10021136 pacid=23182408 polypeptide=Lus10021136 locus=Lus10021136.g ID=Lus10021136.BGIv1.0 annot-version=v1.0 MAAVDIFSSSSTNPTLVILIATIIPLLLLTKTFLRSRGRHVTNFPPGPPGWPVIGNLLDLGKMPHRTLTQMRNTYGDVVYLRLGAMKTMAILSTKAASEF FKNHDLDFADRTVTEIMKVHGYDKGSMVLAPYGPYWRVLRKLVTVDMMVAKRINGSYGVRRKCVDNMIRWVGEESGSGSEIEVARFVFLTTFNLLGNLML SKDLLDSKSAEGKEFFTAMMGLMEWGGHANVADIFPWLKSLDPQGLCRKMRRDLGKAMEIASKFVNERVAEEEGGTTKSKNDFLDVLLEFEGNGKDEPEK ISHRDINIFILEIFLAGSETTSSTTEWALTELLRHPESMTKLETELKTVIGPNRKVEESDIDNLPFLQAVVKETFRLHPPIPLLVPRRALRDTIFMGYTI PKDTQVLVNGWSIGRDPDQWEDPGSFKPERFLDSKVDYRGQHYQLMPFGAGRRICAGVPLAHRVVHLILGTLIHEFGWESKVDPGSFDMDDRLGITMRKS ESLMVVPKKKENV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021136 [exp]	0	1
AT1G09480			NAD(P)-binding Rossmann-fold s...		Lus10016389 [exp]	2.4	0.8675
AT3G10330			Cyclin-like family protein (.1...		Lus10016260 [exp]	6.2	0.7676
AT5G03840		TFL-1, TFL1	TERMINAL FLOWER 1, PEBP (phosp...		Lus10021372 [exp]	7.7	0.8052
AT3G58190	AS2	LBD29, ASL16	ASYMMETRIC LEAVES 2-LIKE 16, l...		Lus10000613 [exp]	8.2	0.8564
AT3G56970	bHLH	ORG2, bHLH038	OBP3-RESPONSIVE GENE 3, basic ...		Lus10039006 [exp]	14.7	0.8236
AT4G25560	MYB	LAF1, ATMYB18	LONG AFTER FAR-RED LIGHT 1, my...		Lus10027458 [exp]	15.4	0.8385
					Lus10030669 [exp]	16.3	0.6971
AT3G07840			Pectin lyase-like superfamily ...		Lus10003001 [exp]	21.5	0.8197
AT3G30280			HXXXD-type acyl-transferase fa...		Lus10034600 [exp]	21.6	0.7414
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Lus10008110 [exp]	21.8	0.7951

Compare expression of checked genes

Lus10021136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.