Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52970 326 / 8e-106 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT2G45560 315 / 8e-102 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT1G33720 313 / 5e-101 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45550 304 / 1e-97 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45570 301 / 3e-96 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT5G07990 297 / 9e-95 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45580 275 / 2e-86 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT3G61040 275 / 2e-86 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT4G12320 259 / 3e-80 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT4G12300 251 / 4e-77 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002839 [exp] 876 / 0 AT3G52970 390 / 4e-131 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10021136 [exp] 600 / 0 AT3G52970 436 / 5e-149 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10025749 [exp] 598 / 0 AT3G52970 441 / 9e-151 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10021135 [exp] 342 / 5e-112 AT3G52970 634 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10008936 [exp] 341 / 7e-112 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10029930 [exp] 336 / 8e-110 AT3G52970 557 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Lus10028852 [exp] 320 / 5e-104 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008918 [exp] 310 / 4e-100 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008938 [exp] 310 / 5e-100 AT2G45550 457 / 2e-157 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G094700 [exp] 572 / 0 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029800 [exp] 348 / 3e-114 AT3G52970 626 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G030100 [exp] 347 / 4e-114 AT3G52970 617 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029700 [exp] 343 / 2e-112 AT3G52970 612 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029600 [exp] 342 / 5e-112 AT3G52970 609 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029200 [exp] 341 / 9e-112 AT3G52970 615 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.002G150300 [exp] 339 / 3e-111 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 339 / 4e-111 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.001G113900 [exp] 338 / 1e-110 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 337 / 1e-110 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10021137 pacid=23182409 polypeptide=Lus10021137 locus=Lus10021137.g ID=Lus10021137.BGIv1.0 annot-version=v1.0 ATGGCGATTCAAAACCTCTTCCTTCCATGTTTAATCCTATCCTTAACACTCCTCTTCATCTTCTTCCTCCGCCGCAAAAAGCCGACGGCGCCGTACCCGC CTGGCCCACGGGGCTGGCCAATCATCGGCAACCTACTCGACCTCGGCCAAATGCCCCACCGCACACTAACCCAAATGCGCCAAAAATACGGCGACGTCGT TTGGCTGAAATTCGGTGCCACCAACACTTTGGCAATCCTCTCCGCAAAATCCGCCGCCGAGGTTTTCAAAAACCACGACATCAACTTCATGAACTGCACC CTAACCGAAACCACCAAATCCCACGACTACCACGTGGGATCCCTGGGTCTCTCCCCGTACGGCACCTACTGGCGCGTCCTCCGCCGTCTAGTCACCGTCG ACATGCTCGTCCTCCGTAAGATCAACGACAGCGCCTCCGTAAGGAGGCGCAACGTCGACAACTTAATACAATGGGTGTCGGACGAAGCCCGGCACTCACG TGAGATGCACGTGGCCAGGTTCGTTTTCGACACCACGTTTAACCTGCTGGGGAACTTGCTGCTGTCCAGGGACCTTGTCGGGTCGGATTCGGACGAGGCG GACCGGTTTTTCGAGGCGATGATGGGGTTGATGGAGTGGAGCGGGCATGCCAACGTGGCGGATTTCTTCCCGTGGCTGAGGTGGCTTGACCCGCAAGGGT TGAGGAAGAAGATGGATCGGGATCTCGGGGTTGCTCTTGGGATTGCTTCTAAGTTCGTGAAGGAGAGGATTAGCCATGGTGAAGAGAGTAAGAAGAATGA ATTACAAGGCGGTGGTGACAAGAAGGATTTCCTTGATGTGATGCTTGAGTTCAGGGGTAACGGTAAAGACGAGCCTGATAGTTTCACTCAGCATCAAATC AATATCTTTCTCTTGGAGATATTTTTGGCGGGTTCGGAGACAACTAGTAGCACGACCGAATGGGCGATGACGGAGCTCCTACGAAACCCGGAGTCAATGG CCAAACTCAAAACCGAGCTGGACAGAGTGGTCGGGCCGAATCGAAAAATGGAAGAGTCTGATATAGACGACTTGCCTTTCCTTCAGGCGATTGTGAAAGA GACTTTTAGGCTACACCCGCCGCTTCCGTTGCTGGTGCCGCGGCGCGTGGAGGAGGACGCGCTTTTCATGGGATACCACGTGCCGAAGGGGACTCAGGTG TTGGTGAACGCGTGGGCGATCGGGCGGGACCCGGAAGCGTGGGGGGAGGGGGACGACCCGTGGAGTTTCCGGCCCGAAAGGTTTTTGGGCTCCAAGGTGG ACTTTAGAGGACAACACCATCAGCTGATCCCGTTCGGAGCAGGTCGTCGGGTTTGCGCCGGGTTGTTGCTGGCCCACCGGATGCTTCACTTGGTTTTGGG GACGTTGGTTCATGAGTTTAACTGGGAAGTGAGCGTTGATCCGAAGGACATTGATATGGATGACCGGTTGGGAGTTACGATGAGGAAATTTGAGCCGTTG ATGGCCATGCCCAAGAAGATCGTGAGGGCGTGA
AA sequence Show only first row Show all	>Lus10021137 pacid=23182409 polypeptide=Lus10021137 locus=Lus10021137.g ID=Lus10021137.BGIv1.0 annot-version=v1.0 MAIQNLFLPCLILSLTLLFIFFLRRKKPTAPYPPGPRGWPIIGNLLDLGQMPHRTLTQMRQKYGDVVWLKFGATNTLAILSAKSAAEVFKNHDINFMNCT LTETTKSHDYHVGSLGLSPYGTYWRVLRRLVTVDMLVLRKINDSASVRRRNVDNLIQWVSDEARHSREMHVARFVFDTTFNLLGNLLLSRDLVGSDSDEA DRFFEAMMGLMEWSGHANVADFFPWLRWLDPQGLRKKMDRDLGVALGIASKFVKERISHGEESKKNELQGGGDKKDFLDVMLEFRGNGKDEPDSFTQHQI NIFLLEIFLAGSETTSSTTEWAMTELLRNPESMAKLKTELDRVVGPNRKMEESDIDDLPFLQAIVKETFRLHPPLPLLVPRRVEEDALFMGYHVPKGTQV LVNAWAIGRDPEAWGEGDDPWSFRPERFLGSKVDFRGQHHQLIPFGAGRRVCAGLLLAHRMLHLVLGTLVHEFNWEVSVDPKDIDMDDRLGVTMRKFEPL MAMPKKIVRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52970		CYP76G1	"cytochrome P450, family 76, s...		Lus10021137 [exp]	0	1
AT3G48320		CYP71A21	"cytochrome P450, family 71, s...		Lus10043311 [exp]	1.7	0.9958
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10000333 [exp]	3.0	0.9929
AT3G07310			Protein of unknown function (D...		Lus10002343 [exp]	4.2	0.9941
AT2G20610		RTY1, RTY, HLS3...	SUPERROOT 1, ROOTY 1, ROOTY, H...		Lus10017703 [exp]	6.2	0.9894
AT1G66160		ATCMPG1	"CYS, MET, PRO, and GLY protei...		Lus10040124 [exp]	7.0	0.9912
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10025902 [exp]	7.4	0.9921
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10001322 [exp]	9.2	0.9919
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10012879 [exp]	9.2	0.9924
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	9.4	0.9902
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10005858 [exp]	10.2	0.9908

Compare expression of checked genes

Lus10021137 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.