Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006458 [exp] 46 / 9e-07 ND 37 / 0.003
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021139 pacid=23182324 polypeptide=Lus10021139 locus=Lus10021139.g ID=Lus10021139.BGIv1.0 annot-version=v1.0 ATGAGGATGAGGCACGCTTGTGATGCAAAACCGGCATTCTCAGTTCGGCCAGTTTATGCTCGTGATTTCCCTTATAGCTGCATCTCTACTTCTGTTATCT GCGGGCTTCAAATAGATATTTCGCAAGAGTGCCAATCGGCGATGATGGCCAGAGTTCATCAAACGGACATCCTTCTTGTCTCCGACTCCGGCTGCTCTTT CCGAACAGCATTGAATCCTAAGAAGGAAGCAAATGGAAGCTACCTCCAACTGCCACAATCCCAGCTGGTACCATCCATAAGGGAGAAGGGATCATTAGAA GAACATTGGGCGAGAAAGGTGGAATCTGTTGTAATCACTGATGCTGCAGGAGTTGATATTTCGCCTGGTACATGA
AA sequence Show only first row Show all	>Lus10021139 pacid=23182324 polypeptide=Lus10021139 locus=Lus10021139.g ID=Lus10021139.BGIv1.0 annot-version=v1.0 MRMRHACDAKPAFSVRPVYARDFPYSCISTSVICGLQIDISQECQSAMMARVHQTDILLVSDSGCSFRTALNPKKEANGSYLQLPQSQLVPSIREKGSLE EHWARKVESVVITDAAGVDISPGT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10021139 [exp]	0	1
AT1G21150			Mitochondrial transcription te...		Lus10039174 [exp]	1.0	0.9942
AT2G36540			Haloacid dehalogenase-like hyd...		Lus10016365 [exp]	4.8	0.8869
AT5G46090			Protein of unknown function (D...		Lus10013971 [exp]	5.2	0.8490
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	5.7	0.9559
					Lus10021851 [exp]	6.9	0.9559
AT5G63810		BGAL10	beta-galactosidase 10 (.1)		Lus10023974 [exp]	6.9	0.8734
AT1G59840		CCB4	cofactor assembly of complex C...		Lus10010732 [exp]	7.5	0.8462
					Lus10008791 [exp]	8.0	0.9559
					Lus10010327 [exp]	8.4	0.8330
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012466 [exp]	8.7	0.8636

Compare expression of checked genes

Lus10021139 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.