Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69170 159 / 2e-43 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT5G50570 137 / 6e-36 SBP SPL13, SPL13A SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) AT5G50670 137 / 6e-36 SBP SPL13B SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G02065 130 / 7e-34 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2) AT2G42200 130 / 2e-33 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT3G57920 130 / 2e-33 SBP SPL15, MSC1 squamosa promoter binding protein-like 15 (.1) AT5G43270 127 / 6e-32 SBP SPL2 squamosa promoter binding protein-like 2 (.1.2.3) AT3G60030 129 / 2e-31 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT1G76580 128 / 4e-31 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT2G33810 117 / 5e-31 SBP SPL3 squamosa promoter binding protein-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007984 [exp] 791 / 0 AT1G69170 167 / 2e-46 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10000643 [exp] 162 / 3e-43 AT1G69170 192 / 4e-55 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10036812 [exp] 152 / 1e-40 AT1G69170 186 / 2e-54 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10021034 [exp] 139 / 3e-36 AT2G42200 199 / 2e-60 squamosa promoter binding protein-like 9 (.1) Lus10016275 [exp] 135 / 8e-36 AT2G42200 179 / 1e-53 squamosa promoter binding protein-like 9 (.1) Lus10023818 [exp] 136 / 2e-35 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10011348 [exp] 134 / 4e-35 AT5G50670 164 / 3e-48 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10003126 [exp] 133 / 5e-35 AT5G50670 161 / 5e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10012020 [exp] 135 / 4e-34 AT2G42200 177 / 5e-51 squamosa promoter binding protein-like 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060400 [exp] 318 / 3e-102 AT1G69170 153 / 4e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.008G097900 [exp] 182 / 4e-51 AT1G69170 169 / 2e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.010G154300 [exp] 164 / 2e-44 AT1G69170 152 / 3e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.015G098900 [exp] 146 / 4e-39 AT5G50570 233 / 1e-73 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.012G100700 [exp] 141 / 1e-37 AT5G50570 222 / 6e-70 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.001G058600 [exp] 134 / 1e-34 AT5G50570 164 / 3e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.016G048500 [exp] 133 / 3e-34 AT2G42200 217 / 3e-67 squamosa promoter binding protein-like 9 (.1) Potri.004G046700 [exp] 122 / 7e-33 AT1G53160 135 / 4e-41 squamosa promoter binding protein-like 4 (.1.2) Potri.018G149900 [exp] 130 / 1e-32 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3) Potri.014G057700 [exp] 126 / 2e-32 AT1G02065 247 / 3e-80 squamosa promoter binding protein-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10021141 pacid=23182413 polypeptide=Lus10021141 locus=Lus10021141.g ID=Lus10021141.BGIv1.0 annot-version=v1.0 ATGGAGTATTCTAGCTATGGGAGTAATGGAACTGCTGCTTTTGTCTCTAGTGAAACAACAATGTCATCTTCATCTTCTGATACTTTCACAAGAAGCAGAA CTGGTTCCTTGTTGGATTGGGATTTGAGAAGGGCTTTGGTTTCATCAGCTCCATTTGTTGAGAATCAGAGTTTTGGGGAAATGTGGGGTTACTGCCACCA TGAAGTGGTGGCAAAGGCTTTACCTTTACCTCATGGTTCAGTTAGGTATCACCTGAACAGCAAGGGCGAGACTGAGGAATGCATAAAGAATCCTTTTGTA GTTAGTTCAAGTGCATTGTGCTTAGAAGATGAGTCAAGTTCCAGGCTTTCTGTTTCTAGCTCTGTTTTGGAGTACTCCACCAACAGTAGTAAGGATCACT CTTCTGCTTCTTTCATTGATTTGAAGCTTGGGAGGGTTGGGGATCCATCTAAGTTGTACACTCCTCCGAAAAGAGCACGGTTCGGAGGAGCCAACTCGAA TGCAGCAGCACACTGCCAAGTTTATGGATGTAACAAGGATTTGAGCTCCTCGAAAGAGTATCATAAGAGACATAAAGTGTGTGATGTTCACTCAAAGACG GCTAAGGTCATTGTTAATGGAATTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGTTTCATTTGCTGCCTGAATTTGACGATGGCAAGCGCAGCTGCCGCA AGCGCCTTGCAGGTCACAATGAGCGTAGGCGAAAGCCTCAAGTCGGCCTTCATTCTGGAAGGGCTGCTAGACTAATTCAAGCATACAATGGCTTCCCGAA TGGCAGAATTCAGGAGACTGGATTGACATCATCTTTTATCTGCCAAGACATACTCCCGGAAACTCTACTATATCCTGAGAGATACAATGCAAATGAGTAC TGGTTCAGACGCGTTAAGCACGAAGATGAGGAGAGTAATATGAGTCCTAATCTATCTGGCATTCACCACTTGCAGTCGGAACAACCACTCTATCCCTTTG AGAAAATGTTCCCTGCATTCGCCGACGGTGTGGTTACTACACCATCTGGAAGCATCTTCAGCGAGAACAGCAACCGATATCCACTTGACGTTGGAGGGTC GAATTCATCATCACATTGTCTTGTGCCTCAAGGCACCTCTTCTTTAGGAAACGATGAGTTCATTACATTGGATGCAGCAGCATCAGTAACCATTCAGGGA TTATCTGGTGTCACAATTGCAGACTCCTCCTCCACTGGTTGTGCTCTCTCTCTTCTGTCATCTCAATCACAGAGTTCATCATCAAGCCAGTCATCAGGAA TCCCCCTGGCCGGCCATCATTATAGTATGAACCACCAGCAGCAGGTTTCAGGAAGGATGATAAGATTCGGTCTCTCTACAGAAGCGAGTCACTTGATGAG TCCCTTACTCCTTTCTCACTTGGAGGATAATAACACAAATGGAGAAGACACCACCACCATCGACTTGCTTCAACTGTCATCGCAGCTTCACCGTGTAGAA CACGAAAAGCAGAAGTCTTTGCAACAATTGGAACAAGATGCTGCTGAGGGTTACCATTGGTGA
AA sequence Show only first row Show all	>Lus10021141 pacid=23182413 polypeptide=Lus10021141 locus=Lus10021141.g ID=Lus10021141.BGIv1.0 annot-version=v1.0 MEYSSYGSNGTAAFVSSETTMSSSSSDTFTRSRTGSLLDWDLRRALVSSAPFVENQSFGEMWGYCHHEVVAKALPLPHGSVRYHLNSKGETEECIKNPFV VSSSALCLEDESSSRLSVSSSVLEYSTNSSKDHSSASFIDLKLGRVGDPSKLYTPPKRARFGGANSNAAAHCQVYGCNKDLSSSKEYHKRHKVCDVHSKT AKVIVNGIEQRFCQQCSRFHLLPEFDDGKRSCRKRLAGHNERRRKPQVGLHSGRAARLIQAYNGFPNGRIQETGLTSSFICQDILPETLLYPERYNANEY WFRRVKHEDEESNMSPNLSGIHHLQSEQPLYPFEKMFPAFADGVVTTPSGSIFSENSNRYPLDVGGSNSSSHCLVPQGTSSLGNDEFITLDAAASVTIQG LSGVTIADSSSTGCALSLLSSQSQSSSSSQSSGIPLAGHHYSMNHQQQVSGRMIRFGLSTEASHLMSPLLLSHLEDNNTNGEDTTTIDLLQLSSQLHRVE HEKQKSLQQLEQDAAEGYHW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10021141 [exp]	0	1
AT4G03220			Protein with RNI-like/FBD-like...		Lus10006970 [exp]	1.4	0.8577
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026681 [exp]	11.9	0.8237
AT4G34760			SAUR-like auxin-responsive pro...		Lus10007553 [exp]	19.2	0.8064
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Lus10028064 [exp]	20.3	0.8071
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10031354 [exp]	27.4	0.8089
AT3G25890	AP2_ERF	CRF11	cytokinin response factor 11, ...		Lus10021678 [exp]	28.6	0.8134
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10000002 [exp]	29.5	0.7909
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Lus10013302 [exp]	34.8	0.7340
AT2G02120		PDF2.1, LCR70	LOW-MOLECULAR-WEIGHT CYSTEINE-...		Lus10019226 [exp]	36.5	0.7386
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10021044 [exp]	38.7	0.7126

Compare expression of checked genes

Lus10021141 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.