Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15630 363 / 8e-124 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT5G60920 347 / 5e-117 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 333 / 2e-111 COBL1 COBRA-like protein 1 precursor (.1) AT3G29810 318 / 6e-106 COBL2 COBRA-like protein 2 precursor (.1) AT1G09790 248 / 2e-78 COBL6 COBRA-like protein 6 precursor (.1) AT5G49270 110 / 2e-26 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT4G16120 96 / 2e-21 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT3G20580 87 / 1e-18 COBL10 COBRA-like protein 10 precursor (.1) AT3G16860 86 / 7e-18 COBL8 COBRA-like protein 8 precursor (.1) AT4G27110 77 / 6e-15 COBL11 COBRA-like protein 11 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035131 [exp] 376 / 1e-128 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10031972 [exp] 374 / 7e-128 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017863 [exp] 357 / 1e-120 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 356 / 2e-120 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034666 [exp] 347 / 1e-116 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017866 [exp] 346 / 2e-116 AT5G15630 625 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10021144 [exp] 333 / 2e-111 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10012598 [exp] 327 / 2e-109 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10007986 [exp] 328 / 3e-109 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G062200 [exp] 397 / 6e-137 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 374 / 1e-127 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060100 [exp] 373 / 1e-127 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 372 / 6e-127 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117100 [exp] 341 / 2e-114 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.015G060000 [exp] 327 / 4e-109 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 296 / 9e-98 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 290 / 2e-95 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 270 / 2e-87 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G167100 [exp] 231 / 7e-72 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10021142 pacid=23182286 polypeptide=Lus10021142 locus=Lus10021142.g ID=Lus10021142.BGIv1.0 annot-version=v1.0 ATGTGGTTTTGCTTTCACTTCCTTGTCCTCATTGCGGCATTTTCACAAACAGGTGCTTATGATCCACTCGACCCTCATGGAAGAAAACACATCAAATGGG ATGGCATGTCTTGGACCCTTGATGGTTATGTGGTGAGGAGACTGTTCCAACTTCAAAGGAAACCTGCTGCCACACTGTTGCAACAACAACCCTTCCCTAG TGGATCTGCTCCCAGGAGTCCCCAAGAGTTCGCCGATTGCTGTAAAGGCGGTGTGTTGGCATCTAAAGGCCAGGAGGATGCCACCGTGTCATCGTTTCAG CTCACTGTCGGACATTCTGGTACTTCGAATCGAACGGTCAGGTTGCCTAAGGATTTCTACTTGCTTGCACTTGGACCTGGCTATACTTGTGTTGGCGCAT CCATCGTTTCTCCTTCGGTTTTCTATTCGTCCGATGGCAGGCGGAGATCTCAGGCTATGATGACCAAGTTATTCACAAATGATGTGTCTAAGAACCCTTC ATGTTGTGTTTCCTTGTCATCGTTTTACAACCCTGATGTCACCCCTTGTCCCTCTTGTGCCTGTGGATGTCAAAGTGAAAGCAAATGTATGAAGGAAGAT ACCAAGACATTATATGTGGTGCAATCATCAGTAGTGTCAAAGTGTTCGGACCATATGTGCCCAATCAGGGTCCATTGGCATGTGAAGACCAACTACAGAG GCTACTGGAAAGTGAAGCTCAGCATCACAAACCTCAGCTATAGAATGAACTACACTCAATGGACATTCGTAGCTCAGCATCCTAGCCTCGCAAAGATCGC AAACGTTTCGAGTTTCGTGTACAAGCCACTCATGGTTTACGGTCCCATGAACGATACTGGGATGTTCTATGGGATAAAGAACCAGAACGTCCTCCTCCTT GAAGCTGAAGCAGAGGGGAATGTGCAGTCTGAGATCATTCTTCAGAAGGATATAAACAGTTCGTTTACTTTGGAGCATGTTTGGGCTTTTCCTTTGAAGA TATACTTCAATGGCGATGAATGTGTGATGCCTTCCCCTGATACGTATCCCTTCTTACCCAGCTCAGCTGGTTTCCATAGACAGATTTCTCCGCTAGTTTT GGTGTTCATTATTCGATTGATCCTATGA
AA sequence Show only first row Show all	>Lus10021142 pacid=23182286 polypeptide=Lus10021142 locus=Lus10021142.g ID=Lus10021142.BGIv1.0 annot-version=v1.0 MWFCFHFLVLIAAFSQTGAYDPLDPHGRKHIKWDGMSWTLDGYVVRRLFQLQRKPAATLLQQQPFPSGSAPRSPQEFADCCKGGVLASKGQEDATVSSFQ LTVGHSGTSNRTVRLPKDFYLLALGPGYTCVGASIVSPSVFYSSDGRRRSQAMMTKLFTNDVSKNPSCCVSLSSFYNPDVTPCPSCACGCQSESKCMKED TKTLYVVQSSVVSKCSDHMCPIRVHWHVKTNYRGYWKVKLSITNLSYRMNYTQWTFVAQHPSLAKIANVSSFVYKPLMVYGPMNDTGMFYGIKNQNVLLL EAEAEGNVQSEIILQKDINSSFTLEHVWAFPLKIYFNGDECVMPSPDTYPFLPSSAGFHRQISPLVLVFIIRLIL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	0	1
					Lus10036765 [exp]	1.0	1.0000
AT2G16190			unknown protein		Lus10011284 [exp]	1.4	1.0000
AT3G54200			Late embryogenesis abundant (L...		Lus10031554 [exp]	1.7	1.0000
					Lus10006395 [exp]	2.0	1.0000
AT3G55500		ATHEXPALPHA1.7,...	EXPANSIN 16, expansin A16 (.1)		Lus10014406 [exp]	2.2	0.9852
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Lus10023568 [exp]	2.4	0.9794
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10026165 [exp]	2.6	0.9791
					Lus10038080 [exp]	3.0	0.9712
					Lus10027005 [exp]	3.6	0.9644
AT2G12400			unknown protein		Lus10039991 [exp]	4.0	0.9536

Compare expression of checked genes

Lus10021142 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.