Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37860 54 / 1e-08 SPT2 chromatin protein (.1) AT3G02210 47 / 3e-06 COBL1 COBRA-like protein 1 precursor (.1) AT5G60920 45 / 2e-05 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G29810 43 / 5e-05 COBL2 COBRA-like protein 2 precursor (.1) AT2G22720 40 / 0.0005 SPT2 chromatin protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007985 [exp] 82 / 2e-20 AT4G37860 56 / 1e-10 SPT2 chromatin protein (.1) Lus10019243 [exp] 61 / 1e-10 AT2G22720 140 / 1e-35 SPT2 chromatin protein (.1.2.3) Lus10011581 [exp] 60 / 2e-10 AT2G22720 139 / 3e-35 SPT2 chromatin protein (.1.2.3) Lus10007986 [exp] 50 / 2e-07 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10021144 [exp] 50 / 2e-07 AT5G60920 749 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034379 [exp] 49 / 8e-07 AT3G02210 685 / 0.0 COBRA-like protein 1 precursor (.1) Lus10033047 [exp] 45 / 5e-06 AT3G02210 84 / 5e-20 COBRA-like protein 1 precursor (.1) Lus10012598 [exp] 46 / 7e-06 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10034671 [exp] 45 / 2e-05 AT5G60920 732 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G257300 [exp] 65 / 2e-12 AT4G37860 108 / 1e-26 SPT2 chromatin protein (.1) Potri.015G060000 [exp] 45 / 2e-05 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117100 [exp] 44 / 4e-05 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08243 [flax] [poplar] SPT2 SPT2 chromatin protein
Representative CDS sequence Show only first row Show all	>Lus10021143 pacid=23182392 polypeptide=Lus10021143 locus=Lus10021143.g ID=Lus10021143.BGIv1.0 annot-version=v1.0 ATGCTGCAGTTGGTGTCCTTCTTCATGCGTTTCCAGAAACATCTTTCGACTTTCACTTTTGAGAAGGGATGGGCTTTCCCCAGGAGGATTTACATCAATG AGAAGAAGAGGGTCGCCGTGGTGGATTCAATTCGGAAACCCAATGTGGAAAATCATAAACCTCGCGAACCCCCAAAATCCGCCGGAAATAATAAAATTTT GACGACGAGGAGGACGGAAATTGGCAAGGCAGCTGTTAACAGGAAACGTAGCGGTGACGGTGACTTTCTCCCGAAGCGGCGGCGGCTAGTGCGTCGGAGT GACGACGAGGACTCTGAGGAGGATGAAAGAGAAGGGGAGAAGGCTTTGAGTATCGTTAGGAGGATGTTCAATACAAGCAGGTTCGCCGGACGGGATGACA GGGATTTTGGAGCTATGGAGTCGACGTTCGAGGAGATTGGGAAAGAAGAGAGGAGGAGCGCTAAGCTTGCGAGGAAGGAGGATGCGGAAGAGCTCCGGCA ACTTGTTTTGGAGGAACAAAGGGAGAAGGAGAGGAAGAAACGCTCGGCGGCAGCGGCCTCCGGGAAGAAGAGGAAATTTGCCGACTGCGAAATTATTTTG TTTAGTTAG
AA sequence Show only first row Show all	>Lus10021143 pacid=23182392 polypeptide=Lus10021143 locus=Lus10021143.g ID=Lus10021143.BGIv1.0 annot-version=v1.0 MLQLVSFFMRFQKHLSTFTFEKGWAFPRRIYINEKKRVAVVDSIRKPNVENHKPREPPKSAGNNKILTTRRTEIGKAAVNRKRSGDGDFLPKRRRLVRRS DDEDSEEDEREGEKALSIVRRMFNTSRFAGRDDRDFGAMESTFEEIGKEERRSAKLARKEDAEELRQLVLEEQREKERKKRSAAAASGKKRKFADCEIIL FS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G37860			SPT2 chromatin protein (.1)		Lus10021143 [exp]	0	1

Compare expression of checked genes

Lus10021143 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.