Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60920 722 / 0 COB COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G02210 683 / 0 COBL1 COBRA-like protein 1 precursor (.1) AT3G29810 662 / 0 COBL2 COBRA-like protein 2 precursor (.1) AT5G15630 619 / 0 IRX6, COBL4 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT1G09790 446 / 2e-154 COBL6 COBRA-like protein 6 precursor (.1) AT5G60950 242 / 3e-78 COBL5 COBRA-like protein 5 precursor (.1) AT4G16120 153 / 3e-40 ATSEB1, COBL7 ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1) AT5G49270 149 / 5e-39 DER9, MRH4, SHV2, COBL9 SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) AT3G16860 125 / 8e-31 COBL8 COBRA-like protein 8 precursor (.1) AT3G20580 124 / 3e-30 COBL10 COBRA-like protein 10 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007986 [exp] 851 / 0 AT5G60920 755 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034671 [exp] 781 / 0 AT5G60920 732 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10012598 [exp] 680 / 0 AT3G02210 697 / 0.0 COBRA-like protein 1 precursor (.1) Lus10034379 [exp] 664 / 0 AT3G02210 685 / 0.0 COBRA-like protein 1 precursor (.1) Lus10031972 [exp] 610 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10035131 [exp] 609 / 0 AT5G15630 704 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034670 [exp] 605 / 0 AT5G15630 715 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10017863 [exp] 605 / 0 AT5G15630 717 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Lus10034666 [exp] 596 / 0 AT5G15630 627 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G060000 [exp] 756 / 0 AT5G60920 759 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117100 [exp] 690 / 0 AT3G02210 724 / 0.0 COBRA-like protein 1 precursor (.1) Potri.015G060100 [exp] 622 / 0 AT5G15630 739 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098700 [exp] 606 / 0 AT5G60920 614 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.015G060200 [exp] 601 / 0 AT5G15630 669 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.017G098600 [exp] 588 / 0 AT5G60920 601 / 0.0 COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G117200 [exp] 575 / 0 AT5G15630 679 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.012G062200 [exp] 548 / 0 AT5G15630 586 / 0.0 IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1) Potri.004G219200 [exp] 465 / 3e-162 AT1G09790 511 / 2e-180 COBRA-like protein 6 precursor (.1) Potri.004G167100 [exp] 408 / 8e-140 AT3G29810 407 / 2e-139 COBRA-like protein 2 precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04833 [flax] [poplar] COBRA COBRA-like protein
Representative CDS sequence Show only first row Show all	>Lus10021144 pacid=23182418 polypeptide=Lus10021144 locus=Lus10021144.g ID=Lus10021144.BGIv1.0 annot-version=v1.0 ATGGAAGACTCGCACTTCCTTTCTTTTGGTGGCCTCTTCATCAAGCTCTGTGCTCCCACCGTATTGCTGCTTTTCTTGCTCTCTTCCTCTGCTTTCACTT CCACAGAAGCTTATGATGCTTTGGATCCTAATGGGAATCTCACCATCAAATGGGACATCATTAACTGGACCCCAGATGGCTATGTCGCAGTTGTGACCAT GTACAACTTCCAGCAGTACCGCCATATCCAAGCACCAGGGTGGACTCTGGGGTGGTCATGGTCTAAAAAGGAAGTGATTTGGAACATGATGGGAGCTCAA ACCACTGAACAAGGAGACTGTTCCAAGTACAAAGGAAACGTCCCCCATTGTTGTAAGAAGACTCCCACCGTTGTGGATTTATTGCCTGGCACTCCTTACA ACCAGCAGATTGCAAACTGCTGCAAAGGCGGAGTGATCAATGCTTGGGCGCAGGATTCAGCTGGCGCGGTCTCCTCATTCCAAGTCAGCGTCGGAGCTGC TGGAACCACTAACAAGACTGTAAGGGTGCCCAAGAACTTCACCTTGCTTGGACCTGGTCCTGGTTACACTTGTGGCCCTGCCAAGGTTGTTAGGCCTACC AAGTTTTTGACTGCAGATAAAAGGAGGGTCACTCAAGCTTTGATGACATGGAATGTTACTTGCACATACTCGCAATTCCTGGCTCAAAAGACACCGACTT GTTGCGTATCTCTCTCGTCCTTCTATAACGATACGCTCGTGGGATGTCCGACTTGTGCTTGCGGATGTCAAAACAAGACTGCTGGGAGCTGTGTGAATCC AGAAACTCCACATTTAGCCTCGGTGATCTCGGATCCGAACAAACAAGACACGACGCCTTTGGTGCAGTGTACGGGCCATATGTGTCCGATTCGAATCCAT TGGCATGTGAAGCTGAATTACAAGCAGTACTGGAGGGTGAAAGTAACCATCACCAATTTCAACTACAGAATGAATTACACACAGTGGAATCTAGTAGTGC AACACCCCAATTTCGACAATCTTACGCAGCTTTTCAGCTTCAATTACAAGTCATTAACTCCTTATGATGGCTTCAATGATACAGCCATGCTATGGGGAGT CAAGTTCTTCAACGATTTCCTCTCACAAGCTGGCCCCTTGGGGAACGTCCAGTCGGAGCTTCTTTTCCAGAAAGATCTTTCGACTTTCACTTTCGAGAAG GGATGGGCTTTCCCCAGGAGGATTTACTTCAATGGTGATAACTGTGTGATGCCCTCTCCAGATGCATATCCATGGCTGCCTAACGACGGTTCTCAATCAA GCGTGCCTCTACTTCGAGCTCTTGCAAGTGCATTGTTGTCGATCATCGTCCTATTGGCTTATGCATGA
AA sequence Show only first row Show all	>Lus10021144 pacid=23182418 polypeptide=Lus10021144 locus=Lus10021144.g ID=Lus10021144.BGIv1.0 annot-version=v1.0 MEDSHFLSFGGLFIKLCAPTVLLLFLLSSSAFTSTEAYDALDPNGNLTIKWDIINWTPDGYVAVVTMYNFQQYRHIQAPGWTLGWSWSKKEVIWNMMGAQ TTEQGDCSKYKGNVPHCCKKTPTVVDLLPGTPYNQQIANCCKGGVINAWAQDSAGAVSSFQVSVGAAGTTNKTVRVPKNFTLLGPGPGYTCGPAKVVRPT KFLTADKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTLVGCPTCACGCQNKTAGSCVNPETPHLASVISDPNKQDTTPLVQCTGHMCPIRIH WHVKLNYKQYWRVKVTITNFNYRMNYTQWNLVVQHPNFDNLTQLFSFNYKSLTPYDGFNDTAMLWGVKFFNDFLSQAGPLGNVQSELLFQKDLSTFTFEK GWAFPRRIYFNGDNCVMPSPDAYPWLPNDGSQSSVPLLRALASALLSIIVLLAYA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10021144 [exp]	0	1
AT5G60920		COB	COBRA-like extracellular glyco...		Lus10007986 [exp]	1.0	0.8582
AT4G01680	MYB	ATMYB55	myb domain protein 55 (.1.2.3)		Lus10009263 [exp]	3.5	0.8054
AT5G42660			Protein of unknown function (D...		Lus10032863 [exp]	5.2	0.7787
AT3G02350		GAUT9	galacturonosyltransferase 9 (....		Lus10003045 [exp]	7.1	0.8356
AT4G05020		NDB2	NAD(P)H dehydrogenase B2 (.1),...		Lus10018427 [exp]	9.4	0.7762
AT4G37450		ATAGP18, AGP18	arabinogalactan protein 18 (....		Lus10011520 [exp]	11.5	0.7836
AT4G18030			S-adenosyl-L-methionine-depend...		Lus10011045 [exp]	12.6	0.8080
AT5G07720			Galactosyl transferase GMA12/M...		Lus10000563 [exp]	15.2	0.8037
AT3G49720			unknown protein		Lus10011564 [exp]	16.6	0.7744
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10011806 [exp]	19.8	0.7580

Compare expression of checked genes

Lus10021144 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.