Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39040 866 / 0 AtALS1, ABCB27, ALS1, ATTAP2 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) AT1G70610 361 / 1e-115 ABCB26, ATTAP1 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) AT3G62150 360 / 3e-110 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT2G47000 350 / 8e-107 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT1G02520 347 / 2e-105 MDR8, ABCB11, PGP11 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) AT4G01830 345 / 4e-105 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT1G02530 345 / 5e-105 ABCB12, PGP12 ATP-binding cassette B12, P-glycoprotein 12 (.1) AT1G10680 340 / 3e-103 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT5G46540 338 / 1e-102 ABCB7, PGP7 ATP-binding cassette B7, P-glycoprotein 7 (.1) AT3G28860 338 / 2e-102 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007987 [exp] 1263 / 0 AT5G39040 875 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Lus10010067 [exp] 360 / 3e-110 AT1G02520 1748 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10010012 [exp] 355 / 6e-109 AT1G02520 1526 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10038050 [exp] 351 / 3e-107 AT2G47000 1697 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10009988 [exp] 351 / 6e-107 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10009989 [exp] 350 / 2e-106 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10038049 [exp] 349 / 4e-106 AT3G62150 1891 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10010068 [exp] 339 / 1e-102 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10004520 [exp] 329 / 6e-102 AT2G47000 1145 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G059800 [exp] 1045 / 0 AT5G39040 887 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059700 [exp] 1017 / 0 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.015G059600 [exp] 1014 / 0 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.017G097200 [exp] 925 / 0 AT5G39040 892 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.018G051800 [exp] 777 / 0 AT5G39040 627 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1) Potri.010G045900 [exp] 365 / 6e-117 AT1G70610 1033 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Potri.010G003000 [exp] 350 / 9e-107 AT2G47000 1585 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Potri.014G113000 [exp] 349 / 2e-106 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G113500 [exp] 348 / 9e-106 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.001G354900 [exp] 347 / 1e-105 AT4G18050 1723 / 0.0 ATP-binding cassette B9, P-glycoprotein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10021145 pacid=23182368 polypeptide=Lus10021145 locus=Lus10021145.g ID=Lus10021145.BGIv1.0 annot-version=v1.0 ATGCAAAGCTTTGGTGGCCATGGCGAAAGGACACCCCTGCTAACTCGAGGAGAAGGACGAAAAAGGAATGACCCCCAAGGGGATGATCGCTTGTCAGACT TGGAGCATGGAGATGCTGTACCGGCTGCAAATGTCAGTTTCGGTCGAGTTCTTTCACTTGCAAAGCCTGATGCATGGAAGTTGGTCATTGCTACGGTAGC TCTCCTAATCGCCTCTACGTCAAGCATCCTAATTCCTAAGTATGGTGGCAAGATAATCGACATTGTTTCAAGAGATATAAACACAGCTGAAGACAAAGCC GATGCTCTAAATGCTGTTACGAGCACCATACTAGAAATCTTTCTGATCGTTATTCTAGGTTCTGTCTGCACAGCTCTTCGGGCATGGTTGTTTTCCTCAA CTAGTGAGCGGGTGGTTGCACGTTTGAGAAAGAGCTTATTCACTCACCTTGTGAACCAGGAGATAGCCTTCTTTGATGTAACTAGAACCGGGGAACTTCT GAGCCGCTTATCTGAAGATACACAAATCATAAAGAATGCTGCAACATCAAATCTCAGCGAGGCACTGAGGAATGTTTCGACCGCTGTCATTGGGCTTTTC TTCATGTTCTCAACGTCGTGGAAGCTGACATTGTTGGCGTTGGTTGTTGTACCTGTTATTTCTGTTGGGGTACGAAAATTCGGCCGCTTCCTGCGTGAAC TTTCTCACAAGACTCAAGCTGCAGCCGCTGCTGCTGCTTCAATTGCTGAGGAATCGTTTGGAGCCATAAGGACTGTAAGAGCATTTGCACAAGAAGCTTA TGAGGCATCACGTTATTCCGAGAAAGTTGACGTGACATTAAACCTCGGACTTAAACAAGCTAAAGTGGTTGGGCTCTTCAGCGGAGGTATGAATGCGGCA TCAACGCTATCAGTTATTGTGGTAGTGATATATGGAGCAAATTTAACAATAGAAGGCTACATGACTGCTGGTGCTCTTACTTCATTCATTCTCTACAGCT TGACAGTTGGATCATCCATATCAGGATTATCAAATTTGTATACAGTGGCAATGAAAGCCGCGGGTTCTAGTAAGAGAGTTTTCCAACTTCTGGACCGTAC ATCCACCATGTCGAAAGCTGGAGACAAGTGTCCTTTGGGTGACCAAGTTGGTGAAGTGGTGTTGGACGATGTTTGGTTTGCATATCCATCGCGTCCTGGT CATATGGTGCTCAAGGGAATAACATTGACGCTTCAGCCTGGCTCAAAAGTTGCTCTTGTTGGACCCAGTGGCGGAGGAAAAACCACAATAGCAAACTTGA TAGAAAGGTTCTATGACCCAGACAAGGGAAAGATTCTTATCAATGGTGTTCCTCTAGCTGAAATAGCCCACGATCATCTTCACAAGAGGATCAGTATAGT GAGCCAGGAGCCAGTGCTTTTCAACTGTTCCATAGAGGAGAACATAGCCTACGGGTGTGAAGGAAACATTAGCAGCTCTGAAATAGAAAATGCAGCTGCA TTTGACAAACTGCAGAAAATGGCCAATGCACATGAATTTGTGTCGAACTTCCCTGACAAGTACAAGACCCATGTAGGAGAACGCGGAATAAGGCTGTCCG GTGGTCAGAAACAAAGAATCGCTATTGCCAGAGCACTACTCATGAACCCGAGGGTTCTTCTTCTTGACGAAGCCACGAGTGCCCTCGATGCTGAGAGTGA ATACCTAGTCCAGGATGCCATGGACTCTTTGATGAACGGAAGGACTGTTCTGGTCATAGCTCACAGGCTATCGACGGTGCAAAGTGCCAACACTGTCGCA GTTATTTCTGACGGCCAGATAGTCGAGAGTGGCAGCCATGACGAGCTTCTCGATAAAGATGGAGTCTACACAGCTTTAGTCAGGAGACAGCTACAGGGAT CCAGAACAGAAACTGCCTCATAA
AA sequence Show only first row Show all	>Lus10021145 pacid=23182368 polypeptide=Lus10021145 locus=Lus10021145.g ID=Lus10021145.BGIv1.0 annot-version=v1.0 MQSFGGHGERTPLLTRGEGRKRNDPQGDDRLSDLEHGDAVPAANVSFGRVLSLAKPDAWKLVIATVALLIASTSSILIPKYGGKIIDIVSRDINTAEDKA DALNAVTSTILEIFLIVILGSVCTALRAWLFSSTSERVVARLRKSLFTHLVNQEIAFFDVTRTGELLSRLSEDTQIIKNAATSNLSEALRNVSTAVIGLF FMFSTSWKLTLLALVVVPVISVGVRKFGRFLRELSHKTQAAAAAAASIAEESFGAIRTVRAFAQEAYEASRYSEKVDVTLNLGLKQAKVVGLFSGGMNAA STLSVIVVVIYGANLTIEGYMTAGALTSFILYSLTVGSSISGLSNLYTVAMKAAGSSKRVFQLLDRTSTMSKAGDKCPLGDQVGEVVLDDVWFAYPSRPG HMVLKGITLTLQPGSKVALVGPSGGGKTTIANLIERFYDPDKGKILINGVPLAEIAHDHLHKRISIVSQEPVLFNCSIEENIAYGCEGNISSSEIENAAA FDKLQKMANAHEFVSNFPDKYKTHVGERGIRLSGGQKQRIAIARALLMNPRVLLLDEATSALDAESEYLVQDAMDSLMNGRTVLVIAHRLSTVQSANTVA VISDGQIVESGSHDELLDKDGVYTALVRRQLQGSRTETAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39040		AtALS1, ABCB27,...	ARABIDOPSIS THALIANA TRANSPORT...		Lus10021145 [exp]	0	1
AT5G12380		ANNAT8	annexin 8 (.1)		Lus10019780 [exp]	8.3	0.8813
AT5G10280	MYB	ATMYB92, AtMYB6...	myb domain protein 92 (.1)		Lus10036472 [exp]	15.8	0.8789
AT3G49650			P-loop containing nucleoside t...		Lus10011579 [exp]	17.3	0.7621
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10022130 [exp]	17.4	0.8775
AT4G28890			RING/U-box superfamily protein...		Lus10011702 [exp]	23.9	0.8671
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10023002 [exp]	30.7	0.8705
AT3G26210		CYP71B23	"cytochrome P450, family 71, s...		Lus10018262 [exp]	30.7	0.8710
AT5G42785			unknown protein		Lus10001961 [exp]	31.2	0.8392
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10026515 [exp]	34.3	0.8496
AT4G01470		ATTIP1.3, GAMMA...	tonoplast intrinsic protein 1;...		Lus10040863 [exp]	35.4	0.8531

Compare expression of checked genes

Lus10021145 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.