Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74120 467 / 6e-163 Mitochondrial transcription termination factor family protein (.1) AT1G21150 67 / 1e-11 Mitochondrial transcription termination factor family protein (.1) AT1G62010 61 / 1e-09 Mitochondrial transcription termination factor family protein (.1) AT5G54180 60 / 2e-09 PTAC15 plastid transcriptionally active 15 (.1) AT5G23930 59 / 3e-09 Mitochondrial transcription termination factor family protein (.1) AT1G61960 59 / 3e-09 Mitochondrial transcription termination factor family protein (.1) AT1G62085 59 / 5e-09 Mitochondrial transcription termination factor family protein (.1) AT5G55580 57 / 1e-08 Mitochondrial transcription termination factor family protein (.1) AT1G61980 56 / 2e-08 Mitochondrial transcription termination factor family protein (.1) AT1G62120 54 / 2e-07 Mitochondrial transcription termination factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007988 [exp] 845 / 0 AT1G74120 475 / 6e-166 Mitochondrial transcription termination factor family protein (.1) Lus10040817 [exp] 59 / 3e-09 AT5G07900 225 / 6e-70 Mitochondrial transcription termination factor family protein (.1) Lus10003775 [exp] 58 / 1e-08 AT5G55580 546 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10035714 [exp] 55 / 7e-08 AT1G78930 582 / 0.0 Mitochondrial transcription termination factor family protein (.1) Lus10029422 [exp] 53 / 2e-07 AT2G36000 294 / 3e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10004219 [exp] 53 / 3e-07 AT2G36000 293 / 8e-98 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10012021 [exp] 53 / 3e-07 AT5G06810 437 / 5e-141 Mitochondrial transcription termination factor family protein (.1) Lus10016971 [exp] 52 / 4e-07 AT2G36000 271 / 2e-89 EMBRYO DEFECTIVE 3114, Mitochondrial transcription termination factor family protein (.1.2) Lus10016550 [exp] 50 / 2e-06 AT5G07900 219 / 9e-68 Mitochondrial transcription termination factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G051600 [exp] 556 / 0 AT1G74120 501 / 2e-176 Mitochondrial transcription termination factor family protein (.1) Potri.004G013100 [exp] 64 / 5e-11 AT5G07900 198 / 1e-59 Mitochondrial transcription termination factor family protein (.1) Potri.001G034900 [exp] 64 / 7e-11 AT5G07900 184 / 2e-54 Mitochondrial transcription termination factor family protein (.1) Potri.015G005200 [exp] 64 / 1e-10 AT5G54180 493 / 3e-171 plastid transcriptionally active 15 (.1) Potri.001G361800 [exp] 61 / 7e-10 AT5G55580 584 / 0.0 Mitochondrial transcription termination factor family protein (.1) Potri.003G190700 [exp] 61 / 8e-10 AT5G07900 213 / 3e-65 Mitochondrial transcription termination factor family protein (.1) Potri.003G189300 [exp] 59 / 2e-09 AT5G07900 178 / 6e-52 Mitochondrial transcription termination factor family protein (.1) Potri.004G013000 [exp] 59 / 2e-09 AT5G07900 193 / 1e-57 Mitochondrial transcription termination factor family protein (.1) Potri.004G012400 [exp] 59 / 4e-09 AT5G07900 212 / 9e-65 Mitochondrial transcription termination factor family protein (.1) Potri.011G005100 [exp] 58 / 6e-09 AT5G07900 199 / 1e-59 Mitochondrial transcription termination factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02536 [flax] [poplar] mTERF mTERF
Representative CDS sequence Show only first row Show all	>Lus10021146 pacid=23182372 polypeptide=Lus10021146 locus=Lus10021146.g ID=Lus10021146.BGIv1.0 annot-version=v1.0 ATGGCGGCGTTCCGAATCCTCCGAATACCTCCGGTTCTCCGTCGCGCCACCGTCACTTCACAGTTGCCCCCGCTTCTTCCTACCACAGGTCTCCGTTTGC TTGCCACAGAGCCCAGCTCCAGGAATCAGCCTGACTACAGGAAACAGATTTCTCTCGCCAATATCCTCCAGAGGTACGGTTTCCCTACTTCCCAGCTCCA GAATTTCCTTAGCCGGAATCGATTTCTCTTGAATTGGAACTCGTTAGACGTCGAGAAGTCTCTGTGCATCCTCTCATCTTTCAAAATCCCTCGGACTTCT CTCGTCTCTCTATTGAGCGACTGCCCAGGAGTTCTGGACTTGCAGTTCTTGAAGAAATGGCAATTAGGGTTTTCCGATTGTGAGGATTTATGTGTTTACC CGTCAGTGATTCGGAGTGTTCTGGAGCTCTCTAGGAAGTTTGATCTTGATGCTGTTATGTTTATGAGCAGAATAGCAGTTTTGAAAGGTTTAGGGTTTAG TGAAGGTACGGTTAGGAAGGTTTTAGAGGGGTTTCCTCGGGTGATTCTGATGAAGGAAGGTGAAATACACAGAAGGGTTGAGTTTCTGAAGGGGATTAGG ATTGGCAGTGATGGAGTTAATTGGATTCTATACTCAGTTCCAGAGGTACTAGGTTTCGGGATCGAAAACAGACTAATGCCATTGCTTACCGAGTTTGAAC AGCTTGGTTTCAGCAAAGAGCTAGTGAGGAAGGAGATCATTACAGAGCCTCGAATTTTCAGCATGGAAGTAGGCGAATTGACAAGGTGTATGGAGTTGCT ACGGTCTTTGAAATGCCGAGAACCGATAAAGTTGAAGATCTTCCGCAATGGAGAACTCAGAGCTGGATTCGACGTGAAACTCAGAATCGATTGCTTATGC AAACACGGGCTGACTCATCGGGAAGCTTTTGCAGTCCTATGGAAGGAGCCGAGGGTGATTGCGTACGATTTAGAAGAGACTGATAAGAGGATTCAGTATT TGGTTAGCACAATGCGATTCAGCACTCGTTGCTTGGTCGAGGTCCCAGAGTATCTAGGTGTGAGTTTTGAGAAGCAGATTGTTCCTCGGTACAATGTGAT CCAGTATCTGCATGCGAAAGGTGGACTTGGTGACGAGGTTGGACTAAAAGGTATCGTAAAGCCGAGCAGGCTTAGGTTCTACAACTTCTACGTGAAGCCA TATCCGGAATGTGAAAGGCTATACGGAAGGTTCTCTGAGGAAGTTAGAAGTAAAAGGCAACATCCAGCTGGAATGTGGAAGCTTTTCAAATCGCCTAGTT ACTCGGACTCGAAAGAGGACGTGAAGAATATGAGGTCATTCATGGATCCTTCTCCTTAG
AA sequence Show only first row Show all	>Lus10021146 pacid=23182372 polypeptide=Lus10021146 locus=Lus10021146.g ID=Lus10021146.BGIv1.0 annot-version=v1.0 MAAFRILRIPPVLRRATVTSQLPPLLPTTGLRLLATEPSSRNQPDYRKQISLANILQRYGFPTSQLQNFLSRNRFLLNWNSLDVEKSLCILSSFKIPRTS LVSLLSDCPGVLDLQFLKKWQLGFSDCEDLCVYPSVIRSVLELSRKFDLDAVMFMSRIAVLKGLGFSEGTVRKVLEGFPRVILMKEGEIHRRVEFLKGIR IGSDGVNWILYSVPEVLGFGIENRLMPLLTEFEQLGFSKELVRKEIITEPRIFSMEVGELTRCMELLRSLKCREPIKLKIFRNGELRAGFDVKLRIDCLC KHGLTHREAFAVLWKEPRVIAYDLEETDKRIQYLVSTMRFSTRCLVEVPEYLGVSFEKQIVPRYNVIQYLHAKGGLGDEVGLKGIVKPSRLRFYNFYVKP YPECERLYGRFSEEVRSKRQHPAGMWKLFKSPSYSDSKEDVKNMRSFMDPSP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74120			Mitochondrial transcription te...		Lus10021146 [exp]	0	1
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10036825 [exp]	2.6	0.8495
AT5G54930			AT hook motif-containing prote...		Lus10016478 [exp]	3.5	0.8389
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Lus10033185 [exp]	7.1	0.8342
AT3G05670			RING/U-box protein (.1)		Lus10013501 [exp]	7.9	0.7841
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10041963 [exp]	8.0	0.8311
AT1G04210			Leucine-rich repeat protein ki...		Lus10021898 [exp]	15.2	0.8060
AT5G16270		SYN4, ATRAD21.3	ARABIDOPSIS HOMOLOG OF RAD21 3...		Lus10026862 [exp]	26.0	0.8095
AT2G17020			F-box/RNI-like superfamily pro...		Lus10012518 [exp]	28.6	0.7870
AT3G52250	MYB		Duplicated homeodomain-like su...		Lus10040386 [exp]	30.7	0.8252
AT4G24200			Transcription elongation facto...		Lus10028515 [exp]	33.6	0.7952

Compare expression of checked genes

Lus10021146 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.