Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26190 231 / 2e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G36540 144 / 1e-38 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT3G29760 150 / 2e-38 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) AT2G36550 108 / 3e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007989 [exp] 1657 / 0 AT4G26190 247 / 3e-67 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10034676 [exp] 342 / 4e-104 AT4G26190 225 / 3e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10017858 [exp] 333 / 2e-100 AT4G26190 224 / 8e-62 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10032890 [exp] 230 / 9e-68 AT4G26190 214 / 7e-63 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019759 [exp] 167 / 5e-46 AT2G36540 174 / 1e-53 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10027135 [exp] 139 / 9e-37 AT3G29760 134 / 5e-36 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10016365 [exp] 87 / 6e-19 AT2G36540 87 / 1e-20 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Lus10019760 [exp] 79 / 6e-16 AT2G36540 93 / 7e-23 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G059000 [exp] 291 / 6e-88 AT4G26190 253 / 9e-75 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.004G116400 [exp] 276 / 3e-79 AT4G26190 235 / 4e-65 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G244200 [exp] 213 / 2e-62 AT2G36540 190 / 4e-60 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1) Potri.010G244400 [exp] 186 / 6e-53 AT2G36540 169 / 1e-51 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase
Representative CDS sequence Show only first row Show all	>Lus10021147 pacid=23182445 polypeptide=Lus10021147 locus=Lus10021147.g ID=Lus10021147.BGIv1.0 annot-version=v1.0 ATGACTGATATCTCTGAGACTCAATCCACTGTCGAACTGGAATGCTTACAGACTGCGAAAAGCAGGAAAAAGAAACGAGTGAAGAGGACACATGCCTCTA GTGCTGATACCCTTGCTGATGTATACATCACAAAGGATAATTCTGGTGAAAAGAACACTTCCGTTGAGGAGGCTGGAGTCTATTCTAATTCAAATGATGA TTCTGATAGGACGCAGGAGGCAGATTCAATTACCTTACAGGAAATGATGATGAAAGTGAAGAAGAACAAGAAACGTTTGAAAAATCTCCAGCCTACAACA GTGCTTCCATCACAAGAGGAAGAGGAGCTACTAAAGGAAGGAGGGAAGAAAAGGAAGAAGCGAAAGAAAGACCTGTGTAGTCACCAAACTTTTGCATCAA AAGATGAAGAACAACTTGGCATGATAACACAGGTTTCCATTGATTCCCAGGCTGACATTTCTGTAACAGGTAACACTGTCTGTGAAACAGTTGATGCTGA ATCAAAGAGAGACTTGAGTACTATTAAGCCTACAGAGTTAGCTACCTTCCAGATGGGAGAAAAGAAAAATAAAAGGAAGAAGAAGAAACGTAAGCCGGAA AAGATTCTCAATAGTTTCCAGCCTGCAGAGTTGCTTTCATCGCTACTAGGGGATGGATGCCTTGAGAAGGCACAAAACATTGGTTTTGATGAGGCGCACG TTTCAGCAACAGAGAATACAACTAGTGAAAAAAACGGTTGTGTTGATGAGGCCAACGTTGATGTTCATTCAAAGAAAGGTTCAAATATTACACAGGTGGA AGAATTGGTTACCTCGCAGGAGGAAAGAAAGAAAAAGAAGCGGAAGAAAGCTAAGATAAATCATCAGCCTACAGAATTGCCTGCATCACAGGAGGAAGGT TGCCTTGAGAAGATACAGAAGGTTAGCCTGCCTGAAATATCTGCAACGGGAAAAAATACTATCAGTGAAACAGGTGATCATGTGAATAAGACTGAAGAGT CTGCTATATCAAAGACAAAGTCATGTACTATCCAGACTACAGAGTCAGCTTCCTTACAGAAGGGGGGAAAGACTAAGAAAAGGAAAAAGGAAGATTTGAA TAGTCCCCAGTCCGCAGAATTCATTGCATCACAAGAGAAACAATTACTTCAGAGGACACATACTGTTGGTAGTGACCCACAGATTGACATCTCAGCAACT GGAAGTTTTATTGGAAAAGATTCTGAGGCGTCTGACATTGATGCTAACCCTACAAAGGATATGAATAATTTCCAGACATCAGATCTGGCGGCAGTGGAGG AAGAAAAGAAAACGAAGAATCAGAAAGATTCAAGTTGTGTGCAGCCTATGCAAATGCCTACTGCAGTGGAAGAAGGGAAGATGAATAAGAAGCAGAAGAA AGACTCAATTAGTTCCCATCCTGAACAGTTGGATACATCAGACGAGGAAGAGGTGCTTGAGAGGATACCTGCCAGAGTTTCTCAGTCCGACCTTTCTGCT GAAGATGATAATGTTTGTGTAAAGCACTCTTGTATTGATGAGACGGAAGGTGTTACTAATGAAAAGATAGAGGCAACTAGCCAGGCTGCTAAATCAATTG AACTGCAGAAGGAAGGAAAGAAGAAGAGGAAAGAATTGAATGATGCCCAGCTTGTGGAATTGTTTGAGTTGGAAGATGGGAATGAGGATAAGAAGCAAAA GAAACATTTGCAGCACTTGAACCCCACAGAATCATCTATGTCACAAGAAGAAAAAAGGGGGGTAATGCTTAAACATGGGCAGAGCATTGCTTGTCAAGGC AGAGAAGATGCGCACGGAAACAAAGCTGAAACAGGATTTGTAAACAGAAATGAGATTATGTTGATCCAAGGTGAAAAAGGTTTTTCTCCAGTATGCTTAA CTACAGGTTCAGCTGAAAATGTTGATGGTAAGGAAGCTGTGGTTGTTACTAATAAGGAGACTGTTGAAGTCTCAACAAGACCAGAAACCGATTGTAAAAT TTCAGCTGAAATAGTTGATGGTAATGAAACTGGACTTGGTTCTATTAAGGAGACTATTGAAGTCTCAACAAGTCCAGAACTCATCAGTGGACACATTTCC GGGAACAACTTAAGTGATGAGCTCATGGTGGATAAATTGAACGGAGAACTAAATAGAGAGCAAAACACTTCAATGAAAGCTGAAGAATTTGTCTCGACAG ACAGTGCTCCTTCAAACTTTTCAAAAGAGGATGTAACATCTGAAGATATCAAGAAAATTACTGAAGGGACAGATGAAGAATTGAAGAGGACTTCTCCTGG AGGGAATAAAGCTAGTGGTCGAAGTTCAGAGAATAACTCAAATGGTGAACAATCAGATAAGCATTGTACATCAGTGAAGGAATTGGAGATCACGGCAATG AATAATGCCAATCCTAGCTGTCCTAACCTCGATGTCTTACACGATGAAAGCAACAAAACAACCATAAGTATGAATGTTGCTACAGAAGACAATAGTATTT CACGAGTAATGATTCCATTGAAAAGAGTTCCTGATGTACGTGCTAAAAAGCTCCTTATCCTTGACGTCAATGGACTTTTAGTTGATATCATTCCAAATTC AGAGTGTCCTACTTCACGTCAGCCTGACCTTAACGTCAGTCAAAAGTCAGTTTTCAAAAGGCCCTACTGTAGTGATTTCCTCCGCTTCTGCTTCGAGAAT TTTGCAGTTGGTGTATGGTCGTCAAGAACCTGGAAAAACTTGGACAGAGTAGTCAAGTTTCTCTTTCGAGATTCAGAAAGAAATTTACTTTTCTGTTGGG ACCGATCTAACTGCACTCAGACAGGCTTGTCCACAATCGATGATCCGAACAAACCTCTGGTTTTAAAAGAATTGAGAAGACTATGGAGGGATCGGAAGAC ACTTCCGTGGAGAAGGGGTGTCTTTGATGCATCCAATACGTTATTGTTGGATGATTCGCCATACAAGGCGTTACGTAATCCGGTGCACACAGCCATATTT CCCTATTCATACAAATTCAATGATGCTGAAGATTCCACATTAGGACCAGAGGGTGATCTCCGAAAGTACCTGGAGCGGTTACTCGAGGCACGAAACGTCC AAGAATTCGTGTCGGAAAACCCATTTGGCCAAGGACCGATTACATCGTCCCACCCTTCTTGGCGGTTCTACCGCAAGATCATAATAGGTGAATAA
AA sequence Show only first row Show all	>Lus10021147 pacid=23182445 polypeptide=Lus10021147 locus=Lus10021147.g ID=Lus10021147.BGIv1.0 annot-version=v1.0 MTDISETQSTVELECLQTAKSRKKKRVKRTHASSADTLADVYITKDNSGEKNTSVEEAGVYSNSNDDSDRTQEADSITLQEMMMKVKKNKKRLKNLQPTT VLPSQEEEELLKEGGKKRKKRKKDLCSHQTFASKDEEQLGMITQVSIDSQADISVTGNTVCETVDAESKRDLSTIKPTELATFQMGEKKNKRKKKKRKPE KILNSFQPAELLSSLLGDGCLEKAQNIGFDEAHVSATENTTSEKNGCVDEANVDVHSKKGSNITQVEELVTSQEERKKKKRKKAKINHQPTELPASQEEG CLEKIQKVSLPEISATGKNTISETGDHVNKTEESAISKTKSCTIQTTESASLQKGGKTKKRKKEDLNSPQSAEFIASQEKQLLQRTHTVGSDPQIDISAT GSFIGKDSEASDIDANPTKDMNNFQTSDLAAVEEEKKTKNQKDSSCVQPMQMPTAVEEGKMNKKQKKDSISSHPEQLDTSDEEEVLERIPARVSQSDLSA EDDNVCVKHSCIDETEGVTNEKIEATSQAAKSIELQKEGKKKRKELNDAQLVELFELEDGNEDKKQKKHLQHLNPTESSMSQEEKRGVMLKHGQSIACQG REDAHGNKAETGFVNRNEIMLIQGEKGFSPVCLTTGSAENVDGKEAVVVTNKETVEVSTRPETDCKISAEIVDGNETGLGSIKETIEVSTSPELISGHIS GNNLSDELMVDKLNGELNREQNTSMKAEEFVSTDSAPSNFSKEDVTSEDIKKITEGTDEELKRTSPGGNKASGRSSENNSNGEQSDKHCTSVKELEITAM NNANPSCPNLDVLHDESNKTTISMNVATEDNSISRVMIPLKRVPDVRAKKLLILDVNGLLVDIIPNSECPTSRQPDLNVSQKSVFKRPYCSDFLRFCFEN FAVGVWSSRTWKNLDRVVKFLFRDSERNLLFCWDRSNCTQTGLSTIDDPNKPLVLKELRRLWRDRKTLPWRRGVFDASNTLLLDDSPYKALRNPVHTAIF PYSYKFNDAEDSTLGPEGDLRKYLERLLEARNVQEFVSENPFGQGPITSSHPSWRFYRKIIIGE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G26190			Haloacid dehalogenase-like hyd...		Lus10021147 [exp]	0	1
AT3G04480			endoribonucleases (.1)		Lus10008194 [exp]	3.2	0.8027
AT2G32700		MUM1, LUH	MUCILAGE-MODIFIED 1, LEUNIG_ho...		Lus10043135 [exp]	7.5	0.7863
AT1G68990		MGP3	male gametophyte defective 3 (...		Lus10036844 [exp]	10.8	0.7909
AT1G68080			2-oxoglutarate (2OG) and Fe(II...		Lus10034428 [exp]	14.9	0.7663
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Lus10038714 [exp]	21.2	0.7781
AT5G64730			Transducin/WD40 repeat-like su...		Lus10003855 [exp]	31.0	0.7657
AT1G04300			TRAF-like superfamily protein ...		Lus10021218 [exp]	31.1	0.7828
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10021695 [exp]	38.3	0.7146
AT1G18040		CDKD1;3, AT;CDC...	cyclin-dependent kinase D1;3 (...		Lus10040530 [exp]	42.2	0.7224
					Lus10003602 [exp]	42.4	0.7775

Compare expression of checked genes

Lus10021147 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.