Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G74160 236 / 2e-68 unknown protein AT1G18620 198 / 2e-55 unknown protein AT5G15580 125 / 2e-30 LNG1 longifolia1 (.1) AT3G02170 103 / 4e-23 LNG2 longifolia2 (.1) AT3G63430 65 / 5e-11 unknown protein AT5G15581 50 / 1e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034678 [exp] 307 / 2e-96 AT1G74160 594 / 0.0 unknown protein Lus10017857 [exp] 289 / 2e-87 AT1G74160 752 / 0.0 unknown protein Lus10034677 [exp] 97 / 3e-22 AT1G74160 182 / 1e-51 unknown protein Lus10003090 [exp] 56 / 4e-08 AT3G63430 236 / 1e-68 unknown protein Lus10014716 [exp] 53 / 4e-07 AT3G63430 227 / 2e-65 unknown protein Lus10024836 [exp] 53 / 5e-07 AT3G63430 246 / 3e-72 unknown protein Lus10024434 [exp] 50 / 3e-06 AT3G53540 449 / 2e-144 unknown protein Lus10018750 [exp] 49 / 5e-06 AT3G63430 248 / 6e-73 unknown protein Lus10040814 [exp] 44 / 0.0002 AT5G02390 129 / 4e-31 DUO1-activated unknown 1, Protein of unknown function (DUF3741) (.1), Protein of unknown function (DUF3741) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G058900 [exp] 283 / 2e-85 AT1G74160 795 / 0.0 unknown protein Potri.012G061900 [exp] 281 / 5e-85 AT1G74160 730 / 0.0 unknown protein Potri.017G095000 [exp] 146 / 2e-37 AT1G74160 399 / 3e-122 unknown protein Potri.002G046700 [exp] 54 / 2e-07 AT3G63430 327 / 8e-103 unknown protein Potri.005G216300 [exp] 54 / 2e-07 AT3G63430 245 / 3e-72 unknown protein Potri.006G213700 [exp] 49 / 7e-06 AT3G53540 433 / 1e-136 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021148 pacid=23182401 polypeptide=Lus10021148 locus=Lus10021148.g ID=Lus10021148.BGIv1.0 annot-version=v1.0 ATGGCTGCCAAAATACTGCATTCACTGGCAGATGATAGCTCGGATTTGCACAAGCAAATTGGATGTATGACCGGTATATTTCAAATCTTCGATCGCCAAC AAATGATCAGCCATAACAAGTTTCCAGGTCAATCACACTATAACGATCCTTTGAACGTATACCATCAGCATCCTCCTTTCGATAGAGTGTTGAACAAGAG TACTTTGAATGAAAAGCAAAGGATTTCCTTCGAATCATCGTCTAGAGCTTCTTTCTCGTCCTCAGGTTCCTCTTTGTCCTCTCTGACAAAGGATCTGAGA GCACTTAAACAGATTCTTGAAGCAATGCAAGCTAAGGGCATCCTTGATCAGACTGGGAAAGAAGAGCAAGATTCCAAATTCGGAACTCAACAGAATAGTT TCGCTTCGAATCAAATACCGAGAATGCCAAGGCAACATGAAAATGTGGCTGGTACTTGTACAACTAGAGTTCCTAGCTGTCAGAGGAGGTTTGAGTCCCC AATTGTAATCATGAAACTATTTAGAATAGAGGAAGAAACTTCAAACTTCGAGGAGTTGTCCATCTCGAAACAAGTTGTTATTGCTCTTGAGCAACCTAGT CCGGTCTCAGTTCTTGATCATTCCGCTTACAAAGATGATGACTTCATTGAATCCGTGTCCAACGTTGCAGATTCCGATCTCACCTCGGATATCAATAGAA AGAAGTTAAAGAGCGCCGAGAATTTGGTGGAGAAGCTTAGAAGGCTAAATTATACTCATGATGAAGCTAGCACATATTACATTGCATCACTGTGTGAGGA CACGAACACGACTCCTGATCACCGATACATTTCTGAGATCTTGTTAGCTTCGGGCCTTCTCCTTAGAGATCTTACTACATTTCAGCTGCATTTGTCCGGA TGTCCCATCAACCCTCAGGTATTCTGTGTGCTGGAGCAAACAACAAAGGAAACTTGCAACACAAGGTTCCACCGTAAGCTCATATTCGATGCTATGAACG AGATCCTCACAAAGAAGCTGATGTGTTGTGGTAAGCTGCTGGCCAGGAAGACAATCACAGCGCAAAAGCTGCTGAAGGAGTTGTGTTGGGAGATCGATCA TCAGCAGCTTCAAGTTGAGAAGTCGGAATGGAGGTCATTAGAAGATAAAGATGATCAGGATGGTCTGAGAGTCATGTTGTGGGAAGATTTGACACGAAGA TCGGAGAGCTGGTCGCAGTTTGATAATGAGGTTTCTGGGGGGTTAGTATTAGATGTTGAGAGGCTGGTGTCTAAGGAATTGGTAGACGAGATTGTGATGG GTGAAGAAGCTGGTTGTCGGACCAAATTAGGTAGACGGAGGAGGCAGATGTTTGCCAAGTAG
AA sequence Show only first row Show all	>Lus10021148 pacid=23182401 polypeptide=Lus10021148 locus=Lus10021148.g ID=Lus10021148.BGIv1.0 annot-version=v1.0 MAAKILHSLADDSSDLHKQIGCMTGIFQIFDRQQMISHNKFPGQSHYNDPLNVYHQHPPFDRVLNKSTLNEKQRISFESSSRASFSSSGSSLSSLTKDLR ALKQILEAMQAKGILDQTGKEEQDSKFGTQQNSFASNQIPRMPRQHENVAGTCTTRVPSCQRRFESPIVIMKLFRIEEETSNFEELSISKQVVIALEQPS PVSVLDHSAYKDDDFIESVSNVADSDLTSDINRKKLKSAENLVEKLRRLNYTHDEASTYYIASLCEDTNTTPDHRYISEILLASGLLLRDLTTFQLHLSG CPINPQVFCVLEQTTKETCNTRFHRKLIFDAMNEILTKKLMCCGKLLARKTITAQKLLKELCWEIDHQQLQVEKSEWRSLEDKDDQDGLRVMLWEDLTRR SESWSQFDNEVSGGLVLDVERLVSKELVDEIVMGEEAGCRTKLGRRRRQMFAK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G74160			unknown protein		Lus10021148 [exp]	0	1
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007658 [exp]	1.7	0.9090
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10039573 [exp]	1.7	0.9203
AT1G75900		EXL3	GDSL-like Lipase/Acylhydrolase...		Lus10034540 [exp]	2.0	0.9186
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10037266 [exp]	3.0	0.8825
AT3G29030		ATEXP5, ATHEXPA...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10033011 [exp]	3.9	0.8975
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10005315 [exp]	4.0	0.9074
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10027421 [exp]	4.9	0.8753
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10000322 [exp]	5.1	0.8661
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10004918 [exp]	5.5	0.8936
AT4G38840			SAUR-like auxin-responsive pro...		Lus10025911 [exp]	6.6	0.8761

Compare expression of checked genes

Lus10021148 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.