Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08060 156 / 3e-50 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040513 [exp] 226 / 3e-78 AT5G08060 179 / 1e-59 unknown protein Lus10034681 [exp] 191 / 3e-64 AT5G08060 186 / 6e-62 unknown protein Lus10017854 [exp] 188 / 4e-63 AT5G08060 186 / 5e-62 unknown protein Lus10017855 [exp] 186 / 6e-62 ND 170 / 2e-55
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G123700 [exp] 154 / 1e-49 AT5G08060 146 / 3e-46 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021149 pacid=23182302 polypeptide=Lus10021149 locus=Lus10021149.g ID=Lus10021149.BGIv1.0 annot-version=v1.0 ATGGCGAAATTCTCCGCCGGCAGTTTCCTGCAGATTCTCAGGCGCTACATTAAGAAGCCATGGGAGATAACGGGTCCTTGCGCCGACCCAGAATACAGGC TGGCCATCCCCAAAGCGGTGGAGTACCGAATTGAATGCCCTGCTTCAACCAAGGTGAAGCCCATCGTCCCATCCTCCGATCCTGAAACCGTCTTCGACAT CAAGTACCACACTCGTGATCAGCGCCGCAACCGCCCGCCGATCAAACGCACCGTATTGAAGAAGGCCAATGTGGAGAAGATGATGAAGGAGAGGACGACC TTCCAACCATCCGATTTCCCTCCTGTTTATCTGACCCAAGCTGTGATTTCCCTCCTGTTTATCTGA
AA sequence Show only first row Show all	>Lus10021149 pacid=23182302 polypeptide=Lus10021149 locus=Lus10021149.g ID=Lus10021149.BGIv1.0 annot-version=v1.0 MAKFSAGSFLQILRRYIKKPWEITGPCADPEYRLAIPKAVEYRIECPASTKVKPIVPSSDPETVFDIKYHTRDQRRNRPPIKRTVLKKANVEKMMKERTT FQPSDFPPVYLTQAVISLLFI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08060			unknown protein		Lus10021149 [exp]	0	1
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10004977 [exp]	2.0	0.9454
AT5G67020			unknown protein		Lus10019344 [exp]	2.4	0.9474
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10006369 [exp]	3.7	0.9071
AT3G63000		NPL41	NPL4-like protein 1 (.1)		Lus10021567 [exp]	4.0	0.9336
AT1G74320			Protein kinase superfamily pro...		Lus10026145 [exp]	4.9	0.9358
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10001568 [exp]	5.9	0.9299
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10000589 [exp]	7.3	0.9028
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Lus10027290 [exp]	9.2	0.9093
AT4G30480		TPR1, AtTPR1	tetratricopeptide repeat 1, Te...		Lus10035117 [exp]	9.6	0.8791
AT4G15248	CO		B-box type zinc finger family ...		Lus10039694 [exp]	10.1	0.9191

Compare expression of checked genes

Lus10021149 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.