Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G26360 1046 / 0 TCP-1/cpn60 chaperonin family protein (.1) AT3G11830 291 / 2e-91 TCP-1/cpn60 chaperonin family protein (.1.2) AT1G24510 289 / 8e-91 TCP-1/cpn60 chaperonin family protein (.1.2) AT3G18190 263 / 7e-81 TCP-1/cpn60 chaperonin family protein (.1) AT3G20050 243 / 3e-73 ATTCP-1 T-complex protein 1 alpha subunit (.1) AT3G03960 224 / 4e-66 TCP-1/cpn60 chaperonin family protein (.1) AT5G20890 218 / 5e-64 TCP-1/cpn60 chaperonin family protein (.1) AT5G16070 202 / 4e-58 TCP-1/cpn60 chaperonin family protein (.1) AT3G02530 202 / 4e-58 TCP-1/cpn60 chaperonin family protein (.1) AT4G33240 97 / 1e-20 FAB1A FORMS APLOID AND BINUCLEATE CELLS 1A, 1-phosphatidylinositol-4-phosphate 5-kinases;zinc ion binding;1-phosphatidylinositol-3-phosphate 5-kinases (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017853 [exp] 1127 / 0 AT5G26360 1041 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10034682 [exp] 1100 / 0 AT5G26360 1016 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10040514 [exp] 1055 / 0 AT5G26360 996 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Lus10008406 [exp] 291 / 3e-91 AT3G11830 1011 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10006457 [exp] 289 / 9e-91 AT1G24510 1009 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10011401 [exp] 289 / 1e-90 AT1G24510 1012 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10036947 [exp] 283 / 3e-88 AT1G24510 1004 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10026773 [exp] 260 / 6e-80 AT3G11830 920 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Lus10037214 [exp] 249 / 1e-75 AT3G20050 999 / 0.0 T-complex protein 1 alpha subunit (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T046300 [exp] 1054 / 0 AT5G26360 1030 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.018G138200 [exp] 1054 / 0 AT5G26360 1029 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G133800 [exp] 1050 / 0 AT5G26360 1028 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.004G195300 [exp] 304 / 2e-96 AT3G11830 985 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.009G157400 [exp] 289 / 1e-90 AT3G11830 929 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.010G051700 [exp] 286 / 6e-90 AT1G24510 989 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.008G182300 [exp] 278 / 7e-87 AT1G24510 1014 / 0.0 TCP-1/cpn60 chaperonin family protein (.1.2) Potri.012G051300 [exp] 272 / 2e-84 AT3G18190 942 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.015G042600 [exp] 266 / 3e-82 AT3G18190 922 / 0.0 TCP-1/cpn60 chaperonin family protein (.1) Potri.014G058500 [exp] 249 / 2e-75 AT3G20050 1006 / 0.0 T-complex protein 1 alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00118 [flax] [poplar] Cpn60_TCP1 TCP-1/cpn60 chaperonin family
Representative CDS sequence Show only first row Show all	>Lus10021150 pacid=23182415 polypeptide=Lus10021150 locus=Lus10021150.g ID=Lus10021150.BGIv1.0 annot-version=v1.0 ATGCACGCTCCTGTTCTTGTTCTCAAGGACTCCTTGAAGCGCGAGTCTGGACAGAAGGTTCACCATGCCAATATCCAGGCCTCAAAGGCTGTCGCTGACA TTATCCGCACGACCTTGGGTCCTAGATCTATGTTGAAGATGCTCCTTGATGCTTCTGGAGGGATTGTTGTCACCAATGACGGAAATGCAATTTTGCGCGA GTTAGATCTTGCTCATCCGGCAGCAAAGTCTATGATTGAGTTGAGTCGTACACAAGATGAAGAAGTGGGAGATGGAACAACATCGGTTATAGTCCTTGCT GGGGAGATGCTCCATGTTGCGGAAGCTTTCATTGACAAAAATTATCATCCTACAGTTATATGTCGAGCATACAACAAAGCTCTGGAGGATGCTATTGCCG TGCTTGATAAAATTGCTATGACTATTGACGTGAATGATCGTGGAACTATGTTAAGCCTGGTAAAGAGCTGCATTGGCACAAAATTCACTAGTCAATTTGG AGACTTGATTGCTGATCTTGCAATTGATGCTACCAAAACTGTCGGTGTCGACCTTGGTCAAGGTTTGCGTGAAGTTGATATCAAGAAGTATATTAAGGTT GAAAAAGTTCCTGGTGGCCAACTAGAGGATTCCAAAGTTCTTAAAGGTGTTATGTTTAACAAGGATGTGGTGGCTCCTGGAAAAATGAAAAGAAAAATTG TTAATCCACGCATCATTCTTCTTGATTGTCCACTTGAATACAAAAAAGGTGAGAATCAAACAAATGCCGAGCTGGTGAAAGAAGAGGACTGGGAACTTCT GCTGAAAATGGAAGAGGAATACATTGAGAATATCTGTCTGCAGATTCTCAAGTTCAAACCAGACTTGGTGATCACTGAAAAGGGTCTTAGCGATTTGGCA TGCCACTACTTTAGCAAGGCTGGCGTTAGTGCAATCAGAAGGCTAAGGAAGACAGACAATAACCGAATTGCTAAAGCATGTGGTGCTGTTATTGTGAATA GACCAGATGAGTTGCAAGAGTCTGATGTTGGTACTGCAGCTGGGCTATTTGAGGTTAAGAAAATTGGTGACGAGTTCTTCTCCTTCATTGTTGATTGCAA AGATCCAAAGGCGTGTACTGTTCTCTTGAGGGGTGCCAGCAAGGATCTCCTGAATGAGGTGGAAAGAAACTTGCAGGATGCCATGGGTGTGGCCAGAAAC ATACTTAAGAACCCAAAACTTGTTCCTGGTGGCGGTGCTACTGAGTTGACTGTATCTGCTACGCTAAAGCAGAAGAGTTCTTCTGTAGAAGGCATCGAAA AGTGGCCTTATGAAGCAGCAGCTATAGCATTTGAGGCAATTCCGCGAACTTTGGCCCAAAACTGTGGTGTGAATGTGATTCGTACGATGACTGCACTCCA AGGGAAACATGCTAATGGTGAAAATGCATGGACTGGCATAGACGGGAACACTGGTGAAATTACTGACATGAAAGAGAGAAAGATATGGGATGCTTACAAC GTGAAGGCACAAACTTTCAAGACAGCAATAGAAGCAGCTTGCATGCTTTTGAGGATTGATGACATTGTCAGTGGAATCAAGAAGAAACAAGCCCCTGGAG CAGGTCCTTCCAAGCCACAGATCGAGACCGAGGGTGATGCTGATGGCGAACAGATTCTACCAGACTAA
AA sequence Show only first row Show all	>Lus10021150 pacid=23182415 polypeptide=Lus10021150 locus=Lus10021150.g ID=Lus10021150.BGIv1.0 annot-version=v1.0 MHAPVLVLKDSLKRESGQKVHHANIQASKAVADIIRTTLGPRSMLKMLLDASGGIVVTNDGNAILRELDLAHPAAKSMIELSRTQDEEVGDGTTSVIVLA GEMLHVAEAFIDKNYHPTVICRAYNKALEDAIAVLDKIAMTIDVNDRGTMLSLVKSCIGTKFTSQFGDLIADLAIDATKTVGVDLGQGLREVDIKKYIKV EKVPGGQLEDSKVLKGVMFNKDVVAPGKMKRKIVNPRIILLDCPLEYKKGENQTNAELVKEEDWELLLKMEEEYIENICLQILKFKPDLVITEKGLSDLA CHYFSKAGVSAIRRLRKTDNNRIAKACGAVIVNRPDELQESDVGTAAGLFEVKKIGDEFFSFIVDCKDPKACTVLLRGASKDLLNEVERNLQDAMGVARN ILKNPKLVPGGGATELTVSATLKQKSSSVEGIEKWPYEAAAIAFEAIPRTLAQNCGVNVIRTMTALQGKHANGENAWTGIDGNTGEITDMKERKIWDAYN VKAQTFKTAIEAACMLLRIDDIVSGIKKKQAPGAGPSKPQIETEGDADGEQILPD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10021150 [exp]	0	1
AT5G67240		SDN3	small RNA degrading nuclease 3...		Lus10019321 [exp]	4.9	0.8892
AT2G28130			unknown protein		Lus10016147 [exp]	6.0	0.8752
AT5G12220			las1-like family protein (.1.2...		Lus10026818 [exp]	6.3	0.8216
AT4G18820			AAA-type ATPase family protein...		Lus10007316 [exp]	6.5	0.8239
AT5G14600			S-adenosyl-L-methionine-depend...		Lus10014554 [exp]	7.7	0.8306
AT4G12740			HhH-GPD base excision DNA repa...		Lus10001182 [exp]	8.2	0.8358
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Lus10042728 [exp]	9.6	0.7956
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10016610 [exp]	10.4	0.8075
AT3G23620			Ribosomal RNA processing Brix ...		Lus10035575 [exp]	10.4	0.8407
AT3G16780			Ribosomal protein L19e family ...		Lus10023387 [exp]	14.2	0.8222

Compare expression of checked genes

Lus10021150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.