Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08050 86 / 3e-21 Protein of unknown function (DUF1118) (.1) AT1G74730 40 / 0.0003 Protein of unknown function (DUF1118) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040515 [exp] 124 / 1e-35 AT5G08050 167 / 7e-53 Protein of unknown function (DUF1118) (.1) Lus10042179 [exp] 44 / 2e-05 AT1G74730 199 / 3e-65 Protein of unknown function (DUF1118) (.1) Lus10004269 [exp] 44 / 2e-05 AT1G74730 199 / 3e-65 Protein of unknown function (DUF1118) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G058600 [exp] 98 / 1e-25 AT5G08050 119 / 2e-34 Protein of unknown function (DUF1118) (.1) Potri.015G065100 [exp] 53 / 1e-08 AT1G74730 142 / 7e-43 Protein of unknown function (DUF1118) (.1) Potri.012G070600 [exp] 42 / 6e-05 AT1G74730 132 / 5e-39 Protein of unknown function (DUF1118) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06549 [flax] [poplar] DUF1118 Protein of unknown function (DUF1118)
Representative CDS sequence Show only first row Show all	>Lus10021151 pacid=23182327 polypeptide=Lus10021151 locus=Lus10021151.g ID=Lus10021151.BGIv1.0 annot-version=v1.0 ATGGGGCTGGCTGTTGATCTCTCCGTCACACATTCCTATCAATCAAATAGCCAAGCAGAAGAAGCAGCACAAGCAGCAGAAGAAGCAGCACAATCACAGA AGAAGAACAAGGAGATGATGATGCCGACGACAACAATCGGCGGGGGGGGAAAAATCGGCGGTGGACGTAGCATCACCGGAAAATCTCCCTTCCACTTCAA GCCAATGGCAGCTGCCCAGAAGTCGTCACCATTGTCTCCACCTTCCAAAACTGTTGTGAAGCAACTAAAGCTACTTACCAAAGCTGAAAAGGCAGGCTTG CTCTCTGCGGCAGAGAAATTTGGTCTCTCACTGTCTTCAATTGAGAAACTGGGTCTTCTCTCCAAAGCCGAGGAACTTGGGGTTCTGTCTGCTGCTACTG ACCCTGCAACTCCAGCTGCTCTCTTCACTCTCAGCTTGGGATTGCTCCTATTGGGTCCTTCTTGTGTTTTGTTAGTCCCCGAGGATTACCCTTGGGAGGT TGTTCTTCAGACCCTTGTCGCTTTGGTCTCTGTTCTTGGTGGCTCTGCTGCTTTTGCTGCTTCCAGTTTTGTTTCCGACCTGCAAAAGTAA
AA sequence Show only first row Show all	>Lus10021151 pacid=23182327 polypeptide=Lus10021151 locus=Lus10021151.g ID=Lus10021151.BGIv1.0 annot-version=v1.0 MGLAVDLSVTHSYQSNSQAEEAAQAAEEAAQSQKKNKEMMMPTTTIGGGGKIGGGRSITGKSPFHFKPMAAAQKSSPLSPPSKTVVKQLKLLTKAEKAGL LSAAEKFGLSLSSIEKLGLLSKAEELGVLSAATDPATPAALFTLSLGLLLLGPSCVLLVPEDYPWEVVLQTLVALVSVLGGSAAFAASSFVSDLQK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08050			Protein of unknown function (D...		Lus10021151 [exp]	0	1
AT4G34190		SEP1	stress enhanced protein 1 (.1)		Lus10002821 [exp]	3.0	0.9261
AT5G21222			protein kinase family protein ...		Lus10034924 [exp]	3.7	0.9148
AT2G34430		LHCB1.4, LHB1B1	light-harvesting chlorophyll-p...		Lus10038489 [exp]	4.6	0.9110
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10000268 [exp]	6.6	0.9093
AT3G06510		SFR2, ATSFR2	SENSITIVE TO FREEZING 2, Glyco...		Lus10011147 [exp]	7.7	0.9083
AT5G13770			Pentatricopeptide repeat (PPR-...		Lus10035089 [exp]	12.2	0.8961
AT1G74470			Pyridine nucleotide-disulphide...		Lus10001642 [exp]	14.3	0.9060
AT5G54270		LHCB3*1, LHCB3*...	light-harvesting chlorophyll B...		Lus10038575 [exp]	14.4	0.8991
AT1G61520		LHCA3*1, LHCA3*...	photosystem I light harvesting...		Lus10016074 [exp]	15.4	0.9058
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10018747 [exp]	19.6	0.8958

Compare expression of checked genes

Lus10021151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.