Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08030 504 / 4e-180 AtGDPD6 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1) AT1G74210 474 / 9e-168 AtGDPD5 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1) AT4G26690 68 / 3e-12 GDPDL3, GPDL2, MRH5, SHV3 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) AT1G66970 64 / 1e-10 GDPDL1, SVL2 Glycerophosphodiester phosphodiesterase \(GDPD\) like 1, SHV3-like 2 (.1.2) AT5G55480 62 / 2e-10 GPDL1, GDPDL4, SVL1 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) AT5G58170 60 / 2e-09 GDPDL7, SVL5 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) AT5G58050 57 / 8e-09 GDPDL6, SVL4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) AT1G66980 56 / 4e-08 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT3G20520 50 / 1e-06 GDPDL5, SVL3 Glycerophosphodiester phosphodiesterase \(GDPD\) like 5, SHV3-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040516 [exp] 679 / 0 AT5G08030 588 / 0.0 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1) Lus10032576 [exp] 77 / 5e-15 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10019605 [exp] 76 / 9e-15 AT5G58170 670 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10019606 [exp] 73 / 1e-13 AT5G58170 454 / 9e-151 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10031604 [exp] 65 / 4e-11 AT4G26690 817 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10014903 [exp] 61 / 1e-09 AT4G26690 833 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10040037 [exp] 56 / 2e-08 AT1G66980 580 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10016584 [exp] 54 / 1e-07 AT4G26690 801 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10040036 [exp] 52 / 4e-07 AT5G58170 520 / 6e-177 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G058400 [exp] 524 / 0 AT1G74210 611 / 0.0 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1) Potri.001G360800 [exp] 83 / 4e-17 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.001G360700 [exp] 75 / 2e-14 AT4G26690 835 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.018G110600 [exp] 74 / 5e-14 AT5G58050 870 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) Potri.006G187600 [exp] 66 / 2e-11 AT5G58170 893 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF03009 [flax] [poplar] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Lus10021152 pacid=23182432 polypeptide=Lus10021152 locus=Lus10021152.g ID=Lus10021152.BGIv1.0 annot-version=v1.0 ATGGGTTCAAGCAGCTTTGCTCCCATCATATTGTTTCTGTCGGTGGTGGTGGCTGTAAGTGGTGGAAGGCCTCTGTATCCTCTACCAAGTAAACTAGCTC AGGGTGCCAAACAGCCTCTACAGACGTCTCGTCCTTACAACATTGCACACAGAGGATCCAATAGAGAACTTCCTGAAGAAACTGGACCTTCCTACATGGT ATATATGTTTACTATATATCCTCCAATAGCAGATTTCATAGAAACTGACATCCTATCCACCAAAGATGGTGTTCTGGTATGCCTTCATGATGTTACACTT GATGAAACTACTGACGTTATGGAGCACAAGGAGTTTGCTGATAGGAAACGGACCTATGAAGTTCAAGGGGAGAATATGACTGGCTTTTTCATTGTTGATT TTACTCTTAAAGAATTGAAGACATTGCGGACTAAGCAGAGATTAGACTTCAGAGATCAAAAGTACAACGGTAAATATTCTATTATTACCTTTCATGAATA CATTTCAATTGCACTGGATGCACCAAGAGTAGTGGGGATATATCCAGAGATGAAGAACCCAATGTTCATCAATGAGCATGTGAAATGGTCCGGTGGTCGG CTATATGAAGATGTTTTCATGGAGACACTTACGAAGTACGGTTATAAAGGTTCATACCTGTCAAAAGATTGGATGAAACAGCCAGTGTTTATCCAGTCTT TCGCCCCAACTTCCCTTCTCTACGTGTCAAACTTGACCGACATCCCATTGGTCTTCGTCATCAACAACGTTACAGTTTTAACCGAGGACACCAAACAGAC ATACTCAGAAATCACTTCTGATGCATACCTGGATTACATTAAGAATTACGTGGTGGGCATTGGACCGTGGAAGGATACAGTAGTGCCAGTAAGGCATAAC CATACGCAAGCACCAACAGATCTTGTTGCAAGAGCTCACGCCCGTGACCTGCAGGTGCATCCGTACACATACCGTAACGAGAACAAGTACTTGCACTTCG ACTTCAATCAAGACCCGTATCAGGAAGCCACGTCACCTCTTTCCAAAGATGATCACAAGGCATCATCGGTGCTGCACAAAATAGCATCGCTGGTCTCTTC TTACAGAAATGGATGA
AA sequence Show only first row Show all	>Lus10021152 pacid=23182432 polypeptide=Lus10021152 locus=Lus10021152.g ID=Lus10021152.BGIv1.0 annot-version=v1.0 MGSSSFAPIILFLSVVVAVSGGRPLYPLPSKLAQGAKQPLQTSRPYNIAHRGSNRELPEETGPSYMVYMFTIYPPIADFIETDILSTKDGVLVCLHDVTL DETTDVMEHKEFADRKRTYEVQGENMTGFFIVDFTLKELKTLRTKQRLDFRDQKYNGKYSIITFHEYISIALDAPRVVGIYPEMKNPMFINEHVKWSGGR LYEDVFMETLTKYGYKGSYLSKDWMKQPVFIQSFAPTSLLYVSNLTDIPLVFVINNVTVLTEDTKQTYSEITSDAYLDYIKNYVVGIGPWKDTVVPVRHN HTQAPTDLVARAHARDLQVHPYTYRNENKYLHFDFNQDPYQEATSPLSKDDHKASSVLHKIASLVSSYRNG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10021152 [exp]	0	1
AT1G14690		MAP65-7	microtubule-associated protein...		Lus10035098 [exp]	3.3	0.8546
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013606 [exp]	5.1	0.8392
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10022891 [exp]	10.2	0.8284
AT4G22260		IM1, IM	IMMUTANS, Alternative oxidase ...		Lus10037518 [exp]	11.7	0.8249
AT2G24220		ATPUP5	purine permease 5 (.1.2)		Lus10022148 [exp]	12.0	0.8241
AT1G67850			Protein of unknown function (D...		Lus10011414 [exp]	12.5	0.7979
AT5G17680			disease resistance protein (TI...		Lus10019708 [exp]	15.6	0.8178
AT5G57040			Lactoylglutathione lyase / gly...		Lus10021574 [exp]	16.2	0.8325
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Lus10033660 [exp]	20.5	0.7871
AT3G04890			Uncharacterized conserved prot...		Lus10015938 [exp]	23.4	0.8215

Compare expression of checked genes

Lus10021152 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.