Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08020 882 / 0 ATRPA70B ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) AT5G61000 851 / 0 ATRPA70D Replication factor-A protein 1-related (.1) AT2G06510 310 / 6e-94 ATRPA70A, ATRPA1A ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) AT5G45400 301 / 1e-88 ATRPA70C Replication factor-A protein 1-related (.1) AT4G19130 294 / 1e-86 Replication factor-A protein 1-related (.1) AT1G52950 80 / 4e-15 Nucleic acid-binding, OB-fold-like protein (.1) AT2G03630 64 / 2e-11 unknown protein AT1G74220 66 / 5e-11 unknown protein AT5G39200 49 / 3e-06 unknown protein AT3G02125 44 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040517 [exp] 1245 / 0 AT5G08020 885 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10006548 [exp] 1012 / 0 AT5G08020 845 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10003268 [exp] 359 / 4e-115 AT5G08020 282 / 2e-89 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10023805 [exp] 284 / 4e-82 AT5G45400 764 / 0.0 Replication factor-A protein 1-related (.1) Lus10003955 [exp] 282 / 9e-82 AT4G19130 715 / 0.0 Replication factor-A protein 1-related (.1) Lus10040518 [exp] 228 / 2e-68 AT1G74220 46 / 9e-06 unknown protein Lus10033436 [exp] 200 / 2e-55 AT2G06510 600 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Lus10034737 [exp] 190 / 2e-51 AT4G19130 517 / 2e-176 Replication factor-A protein 1-related (.1) Lus10033435 [exp] 163 / 1e-44 AT2G06510 426 / 4e-147 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G057300 [exp] 986 / 0 AT5G08020 875 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Potri.003G102700 [exp] 301 / 1e-88 AT5G45400 892 / 0.0 Replication factor-A protein 1-related (.1) Potri.018G065300 [exp] 295 / 7e-88 AT2G06510 897 / 0.0 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT A, ARABIDOPSIS THALIANA REPLICATION PROTEIN A 1A, replication protein A 1A (.1.2) Potri.012G061700 [exp] 102 / 4e-23 AT1G74220 91 / 1e-20 unknown protein Potri.015G057200 [exp] 86 / 2e-17 AT1G74220 77 / 9e-16 unknown protein Potri.017G094300 [exp] 71 / 5e-13 AT5G39200 70 / 3e-14 unknown protein Potri.004G120400 [exp] 68 / 6e-12 AT5G39200 68 / 1e-13 unknown protein Potri.010G158000 [exp] 67 / 3e-11 AT2G03630 108 / 7e-27 unknown protein Potri.008G096300 [exp] 62 / 9e-10 AT2G03630 91 / 2e-20 unknown protein Potri.019G061550 [exp] 62 / 9e-10 AT1G52950 76 / 2e-14 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF04057 [flax] [poplar] Rep-A_N Replication factor-A protein 1, N-terminal domain CL0021 [flax] [poplar] OB PF08646 [flax] [poplar] Rep_fac-A_C Replication factor-A C terminal domain CL0021 [flax] [poplar] OB PF01336 [flax] [poplar] tRNA_anti-codon OB-fold nucleic acid binding domain
Representative CDS sequence Show only first row Show all	>Lus10021153 pacid=23182363 polypeptide=Lus10021153 locus=Lus10021153.g ID=Lus10021153.BGIv1.0 annot-version=v1.0 ATGGCCGCCGGCGGAGAGAAGCCGGAAAGTGGCGATCTGGCAACGACCTCCACCTCCGCGGTGGTGGCTGGAGATCATGACAAACCATCTGCGTCTTCTA GATCGTCGGAGTCATCGTGGGGGGAGCCCGTGGAGAGCACCAAGTCTGCCAACGAGAAATCCAGTCCGGTGGCGGAAGACCCAGATGCGTACCGTATCCC GTCGGAGGTGTTTGCGAGGACGAAATCGTCGACGCCGATGGAGTGGAGCGCGGCGTCGAACGAGTCGTTGTTCAGCATCCAGATGGGGAACATGAGCTTC ACCAAGGACCAGGCCTTCTTGTTGGAGAAATCAGGGGAGCTGGGCTACGATTCAAATTATCCCATGGGTTTGGGCTCAATGGCGAGCCCGATGAGGGAAC ACCGCCCGCCCAAAAGTAATGCTAGCAGCCCAAGTCCCAAGCCTTCCAAGATGACGTCGCCTCAAGATCAGCCCAAGTCGGGTGGGTTGGGTTTAGGTGA ATCCAAAGGTGTTGAAACGATGGGAGAGGTTATAAAGGAAAATGATAGAAATGGTGGTGATAGTGCCGGTGCGAATCAAAATCAAAATTATAATCATCAT GATGTGGGTGTAGGTGGCGGGCCAAGATCTCACTCGACTCAAGTTACTAAGTACCCGTCTTTTGAATCAGCCAGCCTTCGCCGGAGTTCAACCGCCAGCG GAGCCAGTGTCAAATCCTTCGCATTCCCTATATTGACAGGAGACAAACAACATCGATCAACACAGTCACAATCGCAGCCGTCGACTCCTCTGGCAGCACA ACAAGAGGCGGCGGGGTCGAGATCAGATCGGGACAACAACAATAATCAATCGCCGCAACCAGCAACGCCAAAATCAATGGAGAACAAAAAGAATAGTAAT CAAAATGATACCACCGACAACCAGAGTGTGCCAGACACGATGTCGAAATCAGTCACCCCAGATGCCATCTCCACCCTGCTCTCCATCCCTCAGCCAGATT CCCCGTCTGATCTCCCAGAGATTGTTGTTCAGGTCACCAACCTCCAGCCTAAAGGCAAAGCTTACGGCCTTGACGCCAACGATGGTAAGATGAAGCTGAA ATCGCTCTTCAATTCGCGGATGTCTCCTGACATAATCTCCGGTAAAGTTCAGAATCTGGGTCTTATTCGGATTCTAGATTACACCATCAACGAGATTCCA AACAAGTCTGAGAAATATATGATCATTACCAGCTGTGAGGTGGTATCTCCTGCACTTGAGGCTGAGATGAGTAATGGATCTCAAGATGGGGGGATTTTTA AGAAGCCAAGGCTAGACAATGAATTGAAAAGTGAAGCAACAGGGATTGTTTTGAAGCCGAAGCATGATACTGTCACCAAGTCAGCTGCTCAAATAGTCAA TGAACAGAGGACAAATATGGCTCCTAGTTCTCGTATGGCGACGACGAGGAGGGTTCACCCTCTTGTTTCTCTGAACCCTTACCAAGGGAATTGGACCATC AAGGTCAGGGTTACAGGCAAAGGGAACATGCGTACCTATAAGAACATGAGGGGTGAAGGATGTGTTTTCAATGTTGAGTTAACCGATGAAGATGGTACTC AAATACAAGCAACAATGTTCAATGAAGCTGCAAAGAAATTCTTCGAGAGGTTCCAGTTGGGAAAGGTTTATTACATATCAAAGGGATCTCTTAGAGTTGC TAACAAGCAGTATAAAACTGTTGAGAATGATTATGAGATGACATTGAATGACAATTCTGAAGTTGAAGAGGTTGCTAATGAATCAACTATGATCCCTGCA ACCAAGTTTAACTTTGTTCCCATTGATCATATGGGCTCCTATGTCAATTCCAAAGACCTCGTTGATGTCATTGGAGTTGTACAAAGTGTGTCTCCTACCT TGAGTATTAGAAGGAAAAGTGATAATGAGCAAATCCCAAAGCGTGATGTTACCATTGCAGATGAGAGTGAGAAGACTGTTGTTGTTTCTTTGTGGAATGA GCTTGCTACTGGACCTGGGCAAGAGTTGTTGGACATCGCTGATCAATCACCTGTTGTTGCTATCAAAGCTCTTAGAGTTGGAGACTTTCAAGGTGTATCT TTGTCCACGGTAGGGAAAAGCATGTTGCAGATCAACCCGGACACGCCAGAGTCAAAGAAATTAAGATCATGGTATGATTCTAATGGCAAAGACAGTTCTA TGGCCCCTATTGGTTCTGGAATGAGCCCTTCAATGCAGAATGGAGGAAGGTCCATGTATGATGACCGGGTGCCACTGTCTCATATAATAAACGACCAATC CTTGGGTGATGGGAAGCCTGCATTCTTCAACATGAGAGGGTACGTAAGCTTTATAAAGCCTGATCAGACTATGTGGTACCGTGCTTGCAAGACATGCAAC AAGAAAGTGACTGATGGCATGAGTGGTGGATACTGGTGTGAAGGATGCCAGAAGAATGAATCTGAGTGTAGCTTAAGGTACATATTAGCACTGAAAGTGA CGGATGCAAGTGGTGAAGGATGGGTTTCTGCATTCAATGACGAAGCAGAGAAGATTCTAGGCTCCTCTGCTGATGAGCTTGACCAATTGAGATCACAGGA TGATGGGAGTTCCTACCAATCAAAGCTGAAAGCAGCCACTTGGAATCCACATTTGTTAAGGGTTAGCGTTACTCAACATGAGTACAACCATGAGAAGAGG CAGAGGATCACAGTAAAAGCAGTGAGCTCAGTTGATTTTGCTGCTGAATCCAAGTTTTTGCTACAAGAGATCTCAAAGATGAGAGGGTTACAGTAG
AA sequence Show only first row Show all	>Lus10021153 pacid=23182363 polypeptide=Lus10021153 locus=Lus10021153.g ID=Lus10021153.BGIv1.0 annot-version=v1.0 MAAGGEKPESGDLATTSTSAVVAGDHDKPSASSRSSESSWGEPVESTKSANEKSSPVAEDPDAYRIPSEVFARTKSSTPMEWSAASNESLFSIQMGNMSF TKDQAFLLEKSGELGYDSNYPMGLGSMASPMREHRPPKSNASSPSPKPSKMTSPQDQPKSGGLGLGESKGVETMGEVIKENDRNGGDSAGANQNQNYNHH DVGVGGGPRSHSTQVTKYPSFESASLRRSSTASGASVKSFAFPILTGDKQHRSTQSQSQPSTPLAAQQEAAGSRSDRDNNNNQSPQPATPKSMENKKNSN QNDTTDNQSVPDTMSKSVTPDAISTLLSIPQPDSPSDLPEIVVQVTNLQPKGKAYGLDANDGKMKLKSLFNSRMSPDIISGKVQNLGLIRILDYTINEIP NKSEKYMIITSCEVVSPALEAEMSNGSQDGGIFKKPRLDNELKSEATGIVLKPKHDTVTKSAAQIVNEQRTNMAPSSRMATTRRVHPLVSLNPYQGNWTI KVRVTGKGNMRTYKNMRGEGCVFNVELTDEDGTQIQATMFNEAAKKFFERFQLGKVYYISKGSLRVANKQYKTVENDYEMTLNDNSEVEEVANESTMIPA TKFNFVPIDHMGSYVNSKDLVDVIGVVQSVSPTLSIRRKSDNEQIPKRDVTIADESEKTVVVSLWNELATGPGQELLDIADQSPVVAIKALRVGDFQGVS LSTVGKSMLQINPDTPESKKLRSWYDSNGKDSSMAPIGSGMSPSMQNGGRSMYDDRVPLSHIINDQSLGDGKPAFFNMRGYVSFIKPDQTMWYRACKTCN KKVTDGMSGGYWCEGCQKNESECSLRYILALKVTDASGEGWVSAFNDEAEKILGSSADELDQLRSQDDGSSYQSKLKAATWNPHLLRVSVTQHEYNHEKR QRITVKAVSSVDFAAESKFLLQEISKMRGLQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10021153 [exp]	0	1
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10040517 [exp]	1.0	0.9903
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10038142 [exp]	1.4	0.9838
AT5G13060		ABAP1	ARMADILLO BTB protein 1 (.1)		Lus10022039 [exp]	1.7	0.9830
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10030262 [exp]	2.8	0.9687
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Lus10038384 [exp]	3.2	0.9748
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10019866 [exp]	3.2	0.9676
AT5G46280		MCM3	MINICHROMOSOME MAINTENANCE 3, ...		Lus10025389 [exp]	3.5	0.9765
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10042583 [exp]	3.5	0.9713
AT3G20490			unknown protein		Lus10019628 [exp]	3.7	0.9687
AT3G25100		CDC45	cell division cycle 45 (.1)		Lus10022775 [exp]	5.1	0.9622

Compare expression of checked genes

Lus10021153 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.