Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61030 181 / 1e-55 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT1G74230 159 / 3e-47 GR-RBP5 glycine-rich RNA-binding protein 5 (.1) AT3G23830 121 / 2e-34 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT4G13850 121 / 3e-34 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT5G47320 102 / 4e-26 RPS19 ribosomal protein S19 (.1) AT1G18630 96 / 4e-24 GR-RBP6 glycine-rich RNA-binding protein 6 (.1) AT2G21660 95 / 9e-24 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT4G24770 97 / 3e-23 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT2G37220 97 / 3e-23 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G06210 93 / 4e-23 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040519 [exp] 248 / 1e-74 AT5G61030 189 / 2e-53 glycine-rich RNA-binding protein 3 (.1) Lus10017852 [exp] 216 / 1e-69 AT5G61030 178 / 7e-55 glycine-rich RNA-binding protein 3 (.1) Lus10034685 [exp] 214 / 1e-68 AT5G61030 177 / 7e-54 glycine-rich RNA-binding protein 3 (.1) Lus10032591 [exp] 152 / 3e-46 AT4G13850 157 / 5e-50 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10043158 [exp] 148 / 2e-44 AT4G13850 154 / 1e-48 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10022551 [exp] 142 / 5e-42 AT4G13850 167 / 7e-54 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10016639 [exp] 137 / 3e-40 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Lus10023569 [exp] 99 / 2e-25 AT2G21660 147 / 8e-46 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10040454 [exp] 98 / 4e-24 AT2G21660 148 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G061600 [exp] 199 / 6e-63 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1) Potri.015G057400 [exp] 194 / 4e-61 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.017G059000 [exp] 144 / 5e-43 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319900 [exp] 140 / 9e-42 AT4G13850 140 / 1e-43 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.001G319800 [exp] 138 / 7e-41 AT4G13850 137 / 2e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.004G155300 [exp] 100 / 1e-25 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.009G116400 [exp] 97 / 1e-24 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.014G157300 [exp] 96 / 2e-24 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G340800 [exp] 98 / 6e-24 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.006G208500 [exp] 92 / 6e-23 AT5G06210 160 / 1e-51 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10021154 pacid=23182391 polypeptide=Lus10021154 locus=Lus10021154.g ID=Lus10021154.BGIv1.0 annot-version=v1.0 ATGGCATTTTTTAGCAAAATTGGGAGTATACTCAAGCAGGCTTCGAGCAAGCAGATAGCTGCAGAGTTTTCCGCCACCAGACCATCTATCTACCAATCCA TAAGATGCATGTCTACTTCCAAAGTATTCGTAGGAGGGATTTCTTATGCCACAGATGATCACTCATTGAGAGAGGCTTTCAGTAAATATGGAGAAGTCCT AGAAGCACGAGTCATTCTGGACCGTGAAACTGGCAGATCCAGGGGATTCGGGTTTGTTACTTACACTTCAAGTGAGGAGGCCTCTAGTGCCATCCAAGCT TTGGATGGGCAGGATCTTCATGGTCGCAATATAAGGGTGAATTATGCTGCTGAGAGGAACCGTGGTGGCGGTGGTTTTGGAAGTGGAGGTGGTGGCTATA GCGGAGGTGGTGGTTATGGAGGCGGTGGCTATGGTGGAGGCGGTGCTGGAGGCTACAACAGTCCTGGAGGTTATGCAGGTGGTGCTGGAGGAGGCTACGG TGGCATTCCTGCTGGAGGCTACGGCGGCAGTGGTCCTAGTGGAGGTTACGGAGGCAGTCCCAGTGGAGGTTATGGAGGAGGAAATCCTGACGGTGGCTTT GGGGGCAGCCCTAGTGGAGGGTTTGGAGGTTCTCCAGCTGCAACTCCTTATGGGAGAGGGAGGGACTTCGGGGCGGGGGGAGATAACTTTGGTGTTGCTG GTGGCAGCAATGACTTGGGTGGTAATGCTGGTTTTGGAGACGAACAATTTGGTGCACCTGAAAGTGTTACTGGCGGCGAAGCTGAAGCTGGTTTTGAGTT AGAAGCAAATGAGCAGGGTGAGAATGAAGATGATACCGACGACTTTGCTAAGAGGGCTTGA
AA sequence Show only first row Show all	>Lus10021154 pacid=23182391 polypeptide=Lus10021154 locus=Lus10021154.g ID=Lus10021154.BGIv1.0 annot-version=v1.0 MAFFSKIGSILKQASSKQIAAEFSATRPSIYQSIRCMSTSKVFVGGISYATDDHSLREAFSKYGEVLEARVILDRETGRSRGFGFVTYTSSEEASSAIQA LDGQDLHGRNIRVNYAAERNRGGGGFGSGGGGYSGGGGYGGGGYGGGGAGGYNSPGGYAGGAGGGYGGIPAGGYGGSGPSGGYGGSPSGGYGGGNPDGGF GGSPSGGFGGSPAATPYGRGRDFGAGGDNFGVAGGSNDLGGNAGFGDEQFGAPESVTGGEAEAGFELEANEQGENEDDTDDFAKRA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10021154 [exp]	0	1
AT5G60570			Galactose oxidase/kelch repeat...		Lus10041299 [exp]	1.7	0.8832
AT5G61030		GR-RBP3	glycine-rich RNA-binding prote...		Lus10040519 [exp]	3.2	0.8863
AT1G16210			unknown protein		Lus10012520 [exp]	4.5	0.8713
AT3G02510			Regulator of chromosome conden...		Lus10017581 [exp]	5.3	0.8427
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Lus10026388 [exp]	5.5	0.8683
AT2G40940		ERS1	ethylene response sensor 1 (.1...		Lus10013415 [exp]	5.5	0.8589
AT1G31830			Amino acid permease family pro...		Lus10012153 [exp]	5.7	0.8835
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Lus10027463 [exp]	5.9	0.8584
AT3G05670			RING/U-box protein (.1)		Lus10015213 [exp]	8.5	0.8518
AT5G23850			Arabidopsis thaliana protein o...		Lus10039226 [exp]	8.9	0.8415

Compare expression of checked genes

Lus10021154 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.