Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61040 260 / 2e-78 unknown protein AT5G08010 194 / 3e-54 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040520 [exp] 1072 / 0 AT5G08010 290 / 2e-89 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G057600 [exp] 394 / 3e-128 AT5G61040 309 / 2e-96 unknown protein Potri.008G096100 [exp] 129 / 7e-32 AT5G61040 106 / 2e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021155 pacid=23182290 polypeptide=Lus10021155 locus=Lus10021155.g ID=Lus10021155.BGIv1.0 annot-version=v1.0 ATGGATATTTGGGCTTTTGGAGCAGCAGCAGCTGCAGCAGCTGCTGGATGCATAGCCAATCAGTGGAAACCCAATTCCAAGCCTGGCTCAGATTTCTCTG CTGAGGTCTCAAGCTGTGAGAAATCTGAAAGCCCGAGTTGTCGCATAAGTAGGTTACTTTCCAGAAATAAGTTACCGAAAGATTATGGTGCTGGTAGAAG TGCTGGCTTGGATGACAGATCAGATGCCTATTCAGGTGCAGCTTCTGCTAGTGGTTATGTCGAAAATCAGGATCAGAATGCACCTCTAGCTGGAGCATGT GACTCGACTGCTGACGTGATTAATTATACTACGAACCATTGTAGTGGGGGAATGGACTTCTATAATGATGCTAGGGGTAAAAAAAGCTCCATCAGAAGAA CATATCCTCGTACTCATCTTATCAGACCTATAAGTTCTCTTGAAAGTTGTCTCATTGCTCAGTTATGGAATGAGCATGCTGAAATGGAAGAGTATGTGTT CCGTGCCCTTCCTTCACCATCAACAGCTACGAGAACTTTGATTGTAACCAACGGTAGTCAAGTAATTAGTAGGTCCAGCTTTGATTATGCAGCTGGTGTG AACAAGGAAGAAACTGTTTATGGTGTCCTTCCATTGCCTAAATTTGGGTGTTCAAACCCTGCGAAGGAGGGGAAGTCTCGGAGACGGAAGGAGTACCGTC AAAAGCTAACCAGGTTGGATAAAAAGTCAAGCAGCAACAGTCATCCACAGCAAGGGTCAACTGACGAGAAAGTTTTATTCTTTCTTGGGATTTCTCTTGG TGTGATGTCTTCGCTTGTTGCAAACAAAATAGACGTTGACAAACTAAAGGAGTCGTTAAAGCAGACAAAGAATTTGGTTCAAGATTTGCAAGATGAACTC GAGATGAAGGAGGCATTAACAGTCGAAGAGCTAGCCAATGAGAAGTATGAATCTCTGGTTACTAAAAATGAGAATTCCTCTGACAGGTTTGCTACAAATT CACTTTTCCCTACTGAAGATGCACACAAGTCAATTGAAAATGAGAGCCAGGAATCGAACATCGAGAAGGCCAAGGGTCCAGAATACATTAGCAATATTGA AGCGGAGCTTGAAGCTGAACTTGAGAGGTTGGGGCTCAACGTTAGTGCATCAAGTCTAGAGAGGAGACTGTCCGATCTCATCGAACTTGATCCGGACTTT GTAGCAGATTTTGCTCAAGGTGAATTGAAAGTCGACAGGGTCAGGGAAGGTGGTTCACTTTCTGGCCCGGACCGAGATGCAAGTGGCACCTCAACAGCCC ATTCAGGAAACACTGCAGTCTCGGCCAGAGAGTTAAGCATGCGTCTGCATGAAGTTATTCAGTCCAGGCTAGAGGCTCGCATCAGGGAGCTCGAAACAGC CCTAGAAAGCAGCCAGAGAAAGGTGCTGCTTATGGAGTCGGGAGGTACGGTTGTTCAGAGACTTTCAAGCAGGGAGTTAAGATACTCGCCTGGGGAACAA AGTCCCGTTTGCCAAGGTGACTTCAGTTCTGTAGCTCAGCCTGTAGTTATGAACCTTTCAGGGGAAGCTCTAGATGCTTACAATGAGGCATATGAAGAGC TGAGCAAGACGAACGAGTCAGGGGAGGATTATTCTCCAATAGCATTCTATGAGCAGAATGTGCCGAGTCGAGATGGTTACGAACAGGATAAAGAGGAGTC GAGAACAGAAGCACGCATGAGTAGCGAATTGGTTGATTTAGAAAGGTTTCAAGAACTGCAGTACAGTGACGTAGGAAGTGAAGAAGACAGTGACTCGAAT GAGGAGATGGAAGAGTTGATAAAGCAAATACTTGAGAGGACAAAGAAAGGCTCTCCCGCTGTGATAAACGCACAAAAGATGCTGTGTTCAATCGATGACT AA
AA sequence Show only first row Show all	>Lus10021155 pacid=23182290 polypeptide=Lus10021155 locus=Lus10021155.g ID=Lus10021155.BGIv1.0 annot-version=v1.0 MDIWAFGAAAAAAAAGCIANQWKPNSKPGSDFSAEVSSCEKSESPSCRISRLLSRNKLPKDYGAGRSAGLDDRSDAYSGAASASGYVENQDQNAPLAGAC DSTADVINYTTNHCSGGMDFYNDARGKKSSIRRTYPRTHLIRPISSLESCLIAQLWNEHAEMEEYVFRALPSPSTATRTLIVTNGSQVISRSSFDYAAGV NKEETVYGVLPLPKFGCSNPAKEGKSRRRKEYRQKLTRLDKKSSSNSHPQQGSTDEKVLFFLGISLGVMSSLVANKIDVDKLKESLKQTKNLVQDLQDEL EMKEALTVEELANEKYESLVTKNENSSDRFATNSLFPTEDAHKSIENESQESNIEKAKGPEYISNIEAELEAELERLGLNVSASSLERRLSDLIELDPDF VADFAQGELKVDRVREGGSLSGPDRDASGTSTAHSGNTAVSARELSMRLHEVIQSRLEARIRELETALESSQRKVLLMESGGTVVQRLSSRELRYSPGEQ SPVCQGDFSSVAQPVVMNLSGEALDAYNEAYEELSKTNESGEDYSPIAFYEQNVPSRDGYEQDKEESRTEARMSSELVDLERFQELQYSDVGSEEDSDSN EEMEELIKQILERTKKGSPAVINAQKMLCSIDD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61040			unknown protein		Lus10021155 [exp]	0	1
AT5G46390			Peptidase S41 family protein (...		Lus10004601 [exp]	1.0	0.9100
AT2G02390		GST18, ATGSTZ1	GLUTATHIONE S-TRANSFERASE 18, ...		Lus10005367 [exp]	1.4	0.8956
AT1G68830		STN7	STT7 homolog STN7 (.1)		Lus10034273 [exp]	2.4	0.8891
AT3G56010			unknown protein		Lus10040939 [exp]	3.5	0.8870
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10011115 [exp]	4.0	0.8726
AT5G55530			Calcium-dependent lipid-bindin...		Lus10043169 [exp]	5.5	0.8518
AT4G14210		PDE226, PDS3	PIGMENT DEFECTIVE 226, phytoen...		Lus10024003 [exp]	6.0	0.8740
AT3G60300			RWD domain-containing protein ...		Lus10024759 [exp]	6.9	0.8338
AT5G27560			Domain of unknown function (DU...		Lus10029929 [exp]	7.7	0.8755
AT3G23700			Nucleic acid-binding proteins ...		Lus10021484 [exp]	8.8	0.8553

Compare expression of checked genes

Lus10021155 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.