Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18640 399 / 7e-141 PSP 3-phosphoserine phosphatase (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040521 [exp] 565 / 0 AT1G18640 410 / 3e-145 3-phosphoserine phosphatase (.2) Lus10034686 [exp] 488 / 3e-175 AT1G18640 407 / 2e-143 3-phosphoserine phosphatase (.2) Lus10017851 [exp] 478 / 3e-171 AT1G18640 405 / 7e-143 3-phosphoserine phosphatase (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G066200 [exp] 468 / 7e-168 AT1G18640 417 / 3e-148 3-phosphoserine phosphatase (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10021156 pacid=23182382 polypeptide=Lus10021156 locus=Lus10021156.g ID=Lus10021156.BGIv1.0 annot-version=v1.0 ATGGACTGTCATGCTCGTACTTGGTTCCTTGTTTTTTTTTCTTCGCAGCTGATAGATATGCAAGGCCTGGTGCAGTTACGTACCATTACTCCAGTTCATC CTTCGAATAGGCAGCATAATTCTTCTTCCGTTCCTGGCATTTTCCTGCAGTTGCGAAAGAATGTAATACAAAGATGTGACGTGACCAAGAAACAGCATCG GTCATTCTATAAGATTGCTGCTTCAGTTGAACCATTAAAGACCCCACTGGGCCAGTTTGATAACACAATGCCATCTAAAGTGCTTGACCTTTGGAGAAGT GCTGATGCGGTGTGCTTTGATGTCGATTGCACTGCGTGCCTTGATGAAGGCATTGATGAACTTGCAGACTTCTGTGGAGCTGGGAAGGCTGTCGCAGAAT GGACAGCAAGGGCAATGGGAGGCTCTGTTCCTTTTGAGGAGGCATTGGCTGCTAGATTATCGCTATTCAAACCTTCTTTAGCCAAACTCCAAGAATTCTT GGAGAAGAGGCCTCCCAAGGTTTCTCCTGGCATAGATGAGTTAGTGAAGAAGCTCAAGGCCAAGAACACCAATGTCTACCTGATATCTGGTGGCTTTCGG CAAATGATAAATCCTGCTGCATCAGTCCTTGGGATTCCAGTTGAAAACATATTTGCCAACAACCTTCTATTTGGCAGTTCAGGGGAGTTTGTAGGTTTTG ACTCAAATGAGCCTACTTCGAGGAGTGGAGGGAAAGCAACTGCGGTTCAGCAGATAAGAAAGGCTCGTGGGTACAAAGTGATGGTAATGATTGGGGATGG CGCAACTGATCTCGAGGCTCGAAAACCAGGTGGCGGAGACTTATTCATATGCTATGCTGGGGTGCAGCTCCGAGAGGCAGTTGCTGCAAAAGCAGATTGG CTGGTTTTGAATTTCGCAGACCTTATAAATTCTCTGGAATAG
AA sequence Show only first row Show all	>Lus10021156 pacid=23182382 polypeptide=Lus10021156 locus=Lus10021156.g ID=Lus10021156.BGIv1.0 annot-version=v1.0 MDCHARTWFLVFFSSQLIDMQGLVQLRTITPVHPSNRQHNSSSVPGIFLQLRKNVIQRCDVTKKQHRSFYKIAASVEPLKTPLGQFDNTMPSKVLDLWRS ADAVCFDVDCTACLDEGIDELADFCGAGKAVAEWTARAMGGSVPFEEALAARLSLFKPSLAKLQEFLEKRPPKVSPGIDELVKKLKAKNTNVYLISGGFR QMINPAASVLGIPVENIFANNLLFGSSGEFVGFDSNEPTSRSGGKATAVQQIRKARGYKVMVMIGDGATDLEARKPGGGDLFICYAGVQLREAVAAKADW LVLNFADLINSLE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10021156 [exp]	0	1
					Lus10005604 [exp]	12.3	0.7620
AT1G60460			unknown protein		Lus10036440 [exp]	14.7	0.6846
AT3G47570			Leucine-rich repeat protein ki...		Lus10037889 [exp]	16.1	0.7140
AT5G24760			GroES-like zinc-binding dehydr...		Lus10031319 [exp]	25.1	0.7616
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Lus10035890 [exp]	40.5	0.7078
AT1G10710		PHS1	poor homologous synapsis 1 (.1...		Lus10026691 [exp]	42.6	0.6122
AT1G02270			Calcium-binding endonuclease/e...		Lus10030173 [exp]	58.7	0.6658
AT3G45940			Glycosyl hydrolases family 31 ...		Lus10000778 [exp]	60.5	0.6267
AT1G51940			protein kinase family protein ...		Lus10026689 [exp]	62.4	0.6291
AT5G35730			EXS (ERD1/XPR1/SYG1) family pr...		Lus10027149 [exp]	89.3	0.6660

Compare expression of checked genes

Lus10021156 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.