Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18650 153 / 3e-47 PDCB3 plasmodesmata callose-binding protein 3 (.1) AT5G08000 129 / 1e-37 PDCB2, E13L3 PLASMODESMATA CALLOSE-BINDING PROTEIN 2, "glucan endo-1,3-beta-glucosidase-like protein 3", glucan endo-1,3-beta-glucosidase-like protein 3 (.1) AT5G61130 127 / 1e-36 PDCB1 plasmodesmata callose-binding protein 1 (.1) AT4G13600 110 / 5e-30 Carbohydrate-binding X8 domain superfamily protein (.1) AT2G03505 106 / 5e-29 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G69295 101 / 2e-26 PDCB4 plasmodesmata callose-binding protein 4 (.1) AT1G79480 102 / 2e-25 Carbohydrate-binding X8 domain superfamily protein (.1.2) AT1G13830 96 / 1e-24 Carbohydrate-binding X8 domain superfamily protein (.1) AT1G11820 97 / 3e-23 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G26450 91 / 1e-22 Carbohydrate-binding X8 domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040522 [exp] 293 / 1e-101 AT1G18650 158 / 7e-49 plasmodesmata callose-binding protein 3 (.1) Lus10034690 [exp] 200 / 1e-64 AT1G18650 157 / 8e-48 plasmodesmata callose-binding protein 3 (.1) Lus10021619 [exp] 172 / 2e-53 AT1G18650 151 / 1e-45 plasmodesmata callose-binding protein 3 (.1) Lus10026662 [exp] 130 / 3e-37 AT1G18650 145 / 2e-43 plasmodesmata callose-binding protein 3 (.1) Lus10037071 [exp] 127 / 2e-36 AT1G18650 138 / 3e-41 plasmodesmata callose-binding protein 3 (.1) Lus10004650 [exp] 126 / 7e-36 AT1G18650 141 / 4e-42 plasmodesmata callose-binding protein 3 (.1) Lus10036914 [exp] 117 / 2e-32 AT1G18650 139 / 2e-41 plasmodesmata callose-binding protein 3 (.1) Lus10032601 [exp] 110 / 4e-30 AT4G13600 167 / 2e-52 Carbohydrate-binding X8 domain superfamily protein (.1) Lus10016539 [exp] 105 / 4e-26 AT5G24318 484 / 1e-168 O-Glycosyl hydrolases family 17 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G057800 [exp] 171 / 8e-54 AT1G18650 151 / 3e-46 plasmodesmata callose-binding protein 3 (.1) Potri.012G065750 [exp] 167 / 4e-52 AT1G18650 142 / 1e-42 plasmodesmata callose-binding protein 3 (.1) Potri.008G095300 [exp] 135 / 4e-40 AT1G18650 140 / 2e-42 plasmodesmata callose-binding protein 3 (.1) Potri.010G158900 [exp] 134 / 3e-39 AT1G18650 129 / 1e-37 plasmodesmata callose-binding protein 3 (.1) Potri.017G055700 [exp] 116 / 2e-32 AT4G13600 152 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.001G315700 [exp] 106 / 1e-28 AT4G13600 155 / 2e-47 Carbohydrate-binding X8 domain superfamily protein (.1) Potri.004G153800 [exp] 106 / 9e-27 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G008200 [exp] 100 / 1e-25 AT1G79480 142 / 8e-40 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.008G082900 [exp] 100 / 5e-25 AT1G79480 159 / 3e-45 Carbohydrate-binding X8 domain superfamily protein (.1.2) Potri.010G173500 [exp] 100 / 8e-25 AT1G79480 162 / 3e-46 Carbohydrate-binding X8 domain superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07983 [flax] [poplar] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Lus10021157 pacid=23182299 polypeptide=Lus10021157 locus=Lus10021157.g ID=Lus10021157.BGIv1.0 annot-version=v1.0 ATGGCCACAGTTATGCTTCTCTTTGGAATGCTCATGTTGGCCATGACTGGCCCCGCTAGGTGCACATGGTGCGTATGCAAGGACATGCCAGATGCGGTGT TGCAGAAGACTCTGGACTATGCTTGTGGAGCTGGTGCTGACTGTAACCCGACCCACCCAAACGGACCCTGTTTCCAGCCCAACACCGTCAGAGCTCACTG CTCTTACGCCGTCAACAGCTATTTCCAGAAGAAAGGCCAGTCTCAAGGCTCCTGCGATTTCTCCGCCACCGCCACCATCTCTACCTCTGACCCCAGTGTT AGTGGCTGTTCCTTCCCTGCTTCTGCCAGCGCATCAAACACAGTGAGCAACCCAACAACAGGAGGGACAAGCAAAAACCCAGGAGTAGGAACAGGCACAA CCACCACAGTCCCAAACATCAACAATCCATATAATAATGCCAACGGAGGAGGGCTGGGAGGAGGGGTTGGGGATACTGCAAGTAGTAGTGGTACTGGTCT GGGGGCATCGGGACCTGATGGAATCACAGACATGAGTGATGCTGCTGCTATCCCCACACTCTCCTCTTACCTGATCACTCTCGTTCTTGCTGCTATTGCC ACCTTTACTACCTTCTGA
AA sequence Show only first row Show all	>Lus10021157 pacid=23182299 polypeptide=Lus10021157 locus=Lus10021157.g ID=Lus10021157.BGIv1.0 annot-version=v1.0 MATVMLLFGMLMLAMTGPARCTWCVCKDMPDAVLQKTLDYACGAGADCNPTHPNGPCFQPNTVRAHCSYAVNSYFQKKGQSQGSCDFSATATISTSDPSV SGCSFPASASASNTVSNPTTGGTSKNPGVGTGTTTTVPNINNPYNNANGGGLGGGVGDTASSSGTGLGASGPDGITDMSDAAAIPTLSSYLITLVLAAIA TFTTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Lus10021157 [exp]	0	1
AT5G14920			Gibberellin-regulated family p...		Lus10039443 [exp]	1.0	0.9877
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10005892 [exp]	3.2	0.9787
AT3G12210			DNA binding (.1.2)		Lus10007717 [exp]	3.3	0.9649
AT2G20515			unknown protein		Lus10022928 [exp]	4.0	0.9659
AT3G53730			Histone superfamily protein (....		Lus10038481 [exp]	4.2	0.9782
AT3G45980		H2B, HTB9	HISTONE H2B, Histone superfami...		Lus10041347 [exp]	4.9	0.9775
AT5G02560		HTA12	histone H2A 12 (.1.2)		Lus10040853 [exp]	5.5	0.9745
AT3G27360			Histone superfamily protein (....		Lus10013948 [exp]	5.5	0.9748
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10032379 [exp]	7.1	0.9651
AT5G65360			Histone superfamily protein (....		Lus10025439 [exp]	7.9	0.9653

Compare expression of checked genes

Lus10021157 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.