Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07990 684 / 0 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT2G45550 342 / 3e-112 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT2G45560 338 / 9e-111 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT3G26300 331 / 5e-108 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT2G40890 329 / 4e-107 REF8, CYP98A3, C3H1 cytochrome P450, family 98, subfamily A, polypeptide 3 (.1) AT4G12320 328 / 9e-107 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1) AT1G01280 327 / 1e-106 CYP703A2 "cytochrome P450, family 703, subfamily A, polypeptide 2", cytochrome P450, family 703, subfamily A, polypeptide 2 (.1) AT4G12300 324 / 3e-105 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT3G26310 322 / 1e-104 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT4G36220 322 / 4e-104 CYP84A1, FAH1, F5H1 ferulic acid 5-hydroxylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021620 [exp] 711 / 0 AT5G07990 657 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10040525 [exp] 504 / 2e-179 AT5G07990 362 / 2e-123 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10017742 [exp] 394 / 6e-132 AT5G07990 400 / 9e-135 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10013150 [exp] 380 / 1e-126 AT5G07990 403 / 4e-136 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10040526 [exp] 352 / 1e-120 AT5G07990 251 / 2e-81 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10008112 [exp] 361 / 2e-119 AT5G07990 407 / 2e-137 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Lus10035502 [exp] 354 / 9e-117 AT5G06900 533 / 0.0 "cytochrome P450, family 93, subfamily D, polypeptide 1", cytochrome P450, family 93, subfamily D, polypeptide 1 (.1) Lus10028897 [exp] 343 / 1e-112 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10017961 [exp] 341 / 2e-111 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G073300 [exp] 720 / 0 AT5G07990 711 / 0.0 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.009G069100 [exp] 514 / 2e-179 AT5G07990 512 / 1e-178 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G274600 [exp] 483 / 2e-167 AT5G07990 488 / 2e-169 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.001G167900 [exp] 395 / 1e-132 AT5G07990 369 / 1e-122 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066400 [exp] 392 / 2e-131 AT5G07990 385 / 9e-129 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.018G051300 [exp] 375 / 6e-125 AT5G07990 379 / 9e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066600 [exp] 372 / 8e-124 AT5G07990 382 / 1e-127 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.006G141400 [exp] 372 / 1e-123 AT5G07990 373 / 6e-124 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.003G066800 [exp] 369 / 1e-122 AT5G07990 379 / 2e-126 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) Potri.007G040200 [exp] 368 / 2e-122 AT5G07990 389 / 2e-130 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10021158 pacid=23182402 polypeptide=Lus10021158 locus=Lus10021158.g ID=Lus10021158.BGIv1.0 annot-version=v1.0 ATGGCCTCCTGGACGGCGATCATCTCCGGCCTACTATTGGCCACCTTCATCTACTACCTCTTTGCCAACAGGTCGTCCCGGAACCAGAAGGCTCTCCCTC CGGGGCCCAACCCATGGCCGATCGTGGGGAACCTCCCTCATCTGGGTGCAATCCCTCATCACTCCATCGCCGCCCTCGCACGCAAGTACGGACCCCTCAT GTACCTACGGTTAGGGTTCGTGGACGTAGTAGTGGCCGCCTCGGCCTCCGTAGCCGCACAGTTCCTCAAGGTCCACGATGCCAACTTCTCCGACCGTCCG CCCACATCAGGAGGGAAGTTCTTCGCCTACAACTATCAGGACATGGTGTTTGCCCCATACGGACCTCGGTGGAGGCTGCTCCGTAAGGTCAGCGCCGTCC ATCTCTTCTCCACCAAGGCCTTGGATGACTTTACAAACGTCCGCCAGCAAGAAGTGGCAGGGCTCGCGCAGGCACTAGCCAGTCTAGGAGACGCGCCAGT GATTCTGGGACAATTCCTAAACCTCTGCACCACCAACGCGCTCGGAAAGGTGCTGGTGGGTAAGCGAGTGTTCGGTGACATCACCGGAGGGGCAGACCCC AAGGCGGAGGAGTTCAAATCCATGGTGGTGGAGCTAATGGTGCTCGCCGGCGTTTTCAATGTCGGCGATTTCGTCCCAGCTCTGGAATGGCTAGATTTAC AGCGTGTTGCTCATAAGATGAAGAAGCTCCATCTCAGATTCGACTCGTTCTTGAGCCAGCTACTTGAGGAACACGGGAAGACGGCTCACGATGCTTCTGG AGCACATGTGGATTTCTTGAGTACGTTGATTGCATTGAGGCTTGAAGACGGCCCTGACGGCGAGGGAGGGAAGCTCACAGACAATGAAATTAAAGCTTTG CTTCTGAACATGTTCACGGCGGGAACCGACACGTCATCAAGCACGGTGGAGTGGGCTATTGCAGAGCTAATCCGGAACCCAAAAATCATGGGTCAACTCC AAAACGAGCTGGACAACGTTGTGGGCCGAGACCGTCTAGTAACGGAGCTGGACCTGCCCAAGCTCCCTTACCTCCAGGCCGTCATCAAGGAAACGTTTCG TCTCCATCCGTCTACTCCCCTATCTCTCCCGAGGATAGCGGCCCAAAGCTGCGAAATCAACGGCCACCACATCCCCAAAGGTGCCACCCTCCTTGTCAAC GTGTGGGCCATAGCACGGGACCCGGACGTCTGGACCGACCCGTTGAGGTTCGACCCAGGTAGGTTCTTGCCCGGTGGTGACAAGCCCGGGGTGGACGTTA AAGGGAGCGATTTCGAGCTGATCCCTTTCGGGGCGGGGCGGAGGATATGTGCGGGTTTGAGCTTGGGGCTCCGGATGGTTCAACTGATGACTGCTACCTT GGCTCACGCTTTCGATTGGGAGTTGGTTGGGGGGTTGAAGCCGGGGAATTTGAACATGGATGAGGCTTACGGGCTGACTCTCCAGCGAGCTGAGCCGCTG AATCTGAAGCCGAAGCCTCGTTTGTCAGCGCAGGTTTACGGAGGTTGA
AA sequence Show only first row Show all	>Lus10021158 pacid=23182402 polypeptide=Lus10021158 locus=Lus10021158.g ID=Lus10021158.BGIv1.0 annot-version=v1.0 MASWTAIISGLLLATFIYYLFANRSSRNQKALPPGPNPWPIVGNLPHLGAIPHHSIAALARKYGPLMYLRLGFVDVVVAASASVAAQFLKVHDANFSDRP PTSGGKFFAYNYQDMVFAPYGPRWRLLRKVSAVHLFSTKALDDFTNVRQQEVAGLAQALASLGDAPVILGQFLNLCTTNALGKVLVGKRVFGDITGGADP KAEEFKSMVVELMVLAGVFNVGDFVPALEWLDLQRVAHKMKKLHLRFDSFLSQLLEEHGKTAHDASGAHVDFLSTLIALRLEDGPDGEGGKLTDNEIKAL LLNMFTAGTDTSSSTVEWAIAELIRNPKIMGQLQNELDNVVGRDRLVTELDLPKLPYLQAVIKETFRLHPSTPLSLPRIAAQSCEINGHHIPKGATLLVN VWAIARDPDVWTDPLRFDPGRFLPGGDKPGVDVKGSDFELIPFGAGRRICAGLSLGLRMVQLMTATLAHAFDWELVGGLKPGNLNMDEAYGLTLQRAEPL NLKPKPRLSAQVYGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10021158 [exp]	0	1
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Lus10040526 [exp]	1.4	0.9379
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10023670 [exp]	2.0	0.9353
AT1G01420		UGT72B3	UDP-glucosyl transferase 72B3 ...		Lus10001905 [exp]	5.3	0.8931
AT1G09790		COBL6	COBRA-like protein 6 precursor...		Lus10010097 [exp]	6.3	0.8698
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10011745 [exp]	6.7	0.9026
AT4G01070		UGT72B1, GT72B1	UDP-GLUCOSE-DEPENDENT GLUCOSYL...		Lus10003900 [exp]	7.1	0.8580
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10018245 [exp]	8.7	0.8400
AT4G02250			Plant invertase/pectin methyle...		Lus10008201 [exp]	8.7	0.8009
AT1G17930			Aminotransferase-like, plant m...		Lus10011644 [exp]	11.7	0.8687
AT3G51240		TT6, F3'H, F3H	TRANSPARENT TESTA 6, flavanone...		Lus10041912 [exp]	11.8	0.8664

Compare expression of checked genes

Lus10021158 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.