Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61150 474 / 1e-160 VIP4 VERNALIZATION INDEPENDENCE 4, leo1-like family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040529 [exp] 931 / 0 AT5G61150 528 / 0.0 VERNALIZATION INDEPENDENCE 4, leo1-like family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G065600 [exp] 722 / 0 AT5G61150 444 / 4e-149 VERNALIZATION INDEPENDENCE 4, leo1-like family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04004 [flax] [poplar] Leo1 Leo1-like protein
Representative CDS sequence Show only first row Show all	>Lus10021161 pacid=23182442 polypeptide=Lus10021161 locus=Lus10021161.g ID=Lus10021161.BGIv1.0 annot-version=v1.0 ATGGCGGGCGGAGAGAGGAGGCATGAGATGATGCAGAATCTATTCGGGTATCAATCGGAGGAAGAGGAAGAGATGGAGTCCGAGCACGAATCTAACCCTC AGCCCAATTACGCTTCGCTGAGGGATGAAGCTGAGGGAGAACTGAGGAGTGCGATTGAGGATGTGGGTGAAGGTGAAGTAGAGATGCAGGAAGATGTAGA AGTTGAGAGTGAAGGTGATATGCGTGAGGTAGAGCCTGATCCTGGGGAAAGTGAGGGTGAAAGAGAGCCAAGTTCGCAGGAAGTTGATGTTGAGGATAAT AGAGAAGAAAGCGAGCCAAAAGATGCAGAAAGTGATGAGAAACAAGAGTATGATGAGAGGGTTATCACCAGTAGAAGACGTGATGTGGTGGAAAGTGGGT CAGAGAGATCTGAGGAGCAACATTATGTTGACCATGACGATGAGGAAGTTGAGCAAGCTAGAAGCCCAAGTAGATCTCCTGTGGAGGAGAGAGACCAAAC GCACATCTCACATTCAGCTGCTGAGATACGTGATGTCTTTGGTGATTCTGATGACGAGGAAGAGGCAGGATATGCTGTTCAAAATGACATTGAACCAGAT AGTCATAGGTCTCCTTTAGAAGAGGACGCGAGCTATGAGAAGAATCTAAGACCAGAAGACATGCTAGCTGATGAAGATGCCCGATATGAATCAGAAGAGG AGAATTTTGAGGTTAAGCAAAAGGAAAGGCCTGTTGGCCCCCCACTGGAGCTGGAGATTCCATTTCAAGCAGCTCCTGCCCTTCCAACTAGGATGAACTT AATCAAAGTTTCCAATATAATGGGTATTGAGTCACAGCCATTCGATCCCAAGACATACGAGGAGGAGAGAACATTTGTCACTGATGATTCTGGAGCTCGA AAGCGCACACGTTTGGAAAATAACATTGTCCGCTGGCGACGCGTCAGAAATCCTGATGGGTCATCTTCTATTGAAAGTAATGCTCGCTTCGTCCGGTGGT CAGATGGCAGTTTGCAGTTACAACTTGGAAATGAGGTTCTTGATATATCTGTACAGGATGCACAACACGAACAAAGTCACCTCTTTCTTAGGCATAATAA GTCTCTTCTTCAATCTCAAGGAAGAATCTTGAGGAAGATGAAGTTCATGCCATCATCATTATCATCAAACTCGCACAGGCTGTTGACTGCCCTTGTCGAC TCACGGCATAGGAAAGTTTACAAGGTCAAGAATTGCATTACTGACATTGACCCTGAGAGAGAGAAGGAGGAGAAAGAGAGGGCTGAGAGTCAAACAATCA GAGCAAATGTACTTCTTAATCGTAAGAGGGAAAAGGTTAGCCGGAAATATACGCCTGCAGTAGAGCGTAAGCATGAACTCTCAACTGGATTCTTGGAGGA AGCTCTTGACGAGTCGGTCTCGTCGTCTCGTCGCTCTCGTCGCCGGTTTGAGGAAGATCTAGAAGTGGAAGCTCGAGCAGAGAAGCGCATTATGAATGCT AAGAAGGGAAGCAAAGACATCCTACGCAAATCATCTTTTCCCACAGCTAAATCAAGTAAGCGGCCCGTGAACTTCTCAGACAGTGAGAGAGGAGAATCTG AATATGAAAGTGATGAGTATCAAGATGAGAGGTCTCCTCCTAGAAAGAGAGTAGAAGATCCGGAGGATGAGTATGAAGAAGATGAGGAGGAAGAAGAACA ATATAATGAAGAGGCAGAAGCAGATGGCATGTCAGAGGAAGAAGAAGCTGAGGAACCAAATCATAGAGGTAAAGGGAGATTGAGAAATGAGATTCAGTCG GATGAGGATTCCCCGCCTAGGAGGATGCCAGCAGCCCACAGGAGGAAAGCAGTAGTATTCGACAGTGATGACGAATGA
AA sequence Show only first row Show all	>Lus10021161 pacid=23182442 polypeptide=Lus10021161 locus=Lus10021161.g ID=Lus10021161.BGIv1.0 annot-version=v1.0 MAGGERRHEMMQNLFGYQSEEEEEMESEHESNPQPNYASLRDEAEGELRSAIEDVGEGEVEMQEDVEVESEGDMREVEPDPGESEGEREPSSQEVDVEDN REESEPKDAESDEKQEYDERVITSRRRDVVESGSERSEEQHYVDHDDEEVEQARSPSRSPVEERDQTHISHSAAEIRDVFGDSDDEEEAGYAVQNDIEPD SHRSPLEEDASYEKNLRPEDMLADEDARYESEEENFEVKQKERPVGPPLELEIPFQAAPALPTRMNLIKVSNIMGIESQPFDPKTYEEERTFVTDDSGAR KRTRLENNIVRWRRVRNPDGSSSIESNARFVRWSDGSLQLQLGNEVLDISVQDAQHEQSHLFLRHNKSLLQSQGRILRKMKFMPSSLSSNSHRLLTALVD SRHRKVYKVKNCITDIDPEREKEEKERAESQTIRANVLLNRKREKVSRKYTPAVERKHELSTGFLEEALDESVSSSRRSRRRFEEDLEVEARAEKRIMNA KKGSKDILRKSSFPTAKSSKRPVNFSDSERGESEYESDEYQDERSPPRKRVEDPEDEYEEDEEEEEQYNEEAEADGMSEEEEAEEPNHRGKGRLRNEIQS DEDSPPRRMPAAHRRKAVVFDSDDE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G61150		VIP4	VERNALIZATION INDEPENDENCE 4, ...		Lus10021161 [exp]	0	1
AT5G61150		VIP4	VERNALIZATION INDEPENDENCE 4, ...		Lus10040529 [exp]	1.7	0.8995
AT2G26920			Ubiquitin-associated/translati...		Lus10041640 [exp]	4.5	0.8194
AT5G53350		CLPX	CLP protease regulatory subuni...		Lus10036701 [exp]	11.6	0.8712
AT5G65290			LMBR1-like membrane protein (....		Lus10025735 [exp]	12.0	0.8556
AT1G60995			unknown protein		Lus10014638 [exp]	13.7	0.8841
AT4G32160			Phox (PX) domain-containing pr...		Lus10002925 [exp]	14.7	0.8610
AT3G14910			unknown protein		Lus10043078 [exp]	19.1	0.8610
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10039831 [exp]	19.7	0.8289
AT3G14205			Phosphoinositide phosphatase f...		Lus10013184 [exp]	22.4	0.8412
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10018596 [exp]	25.8	0.8544

Compare expression of checked genes

Lus10021161 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.