Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07980 270 / 3e-73 dentin sialophosphoprotein-related (.1) AT5G07970 226 / 7e-60 dentin sialophosphoprotein-related (.1) AT5G07940 148 / 2e-35 unknown protein AT3G29385 112 / 2e-27 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040532 [exp] 1506 / 0 AT5G07980 290 / 5e-80 dentin sialophosphoprotein-related (.1) Lus10021621 [exp] 392 / 1e-113 AT5G07940 265 / 4e-72 unknown protein Lus10034693 [exp] 343 / 3e-99 AT5G07940 126 / 3e-29 unknown protein Lus10040531 [exp] 216 / 2e-64 AT5G07980 109 / 4e-28 dentin sialophosphoprotein-related (.1) Lus10034692 [exp] 49 / 4e-06 AT5G07980 66 / 2e-13 dentin sialophosphoprotein-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G056400 [exp] 983 / 0 AT5G07980 355 / 5e-100 dentin sialophosphoprotein-related (.1) Potri.012G061400 [exp] 929 / 0 AT5G07980 362 / 3e-102 dentin sialophosphoprotein-related (.1) Potri.015G056200 [exp] 572 / 1e-177 AT5G07980 252 / 8e-68 dentin sialophosphoprotein-related (.1) Potri.012G066600 [exp] 565 / 3e-174 AT5G07980 277 / 2e-75 dentin sialophosphoprotein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021162 pacid=23182443 polypeptide=Lus10021162 locus=Lus10021162.g ID=Lus10021162.BGIv1.0 annot-version=v1.0 ATGCCTGGCAACGAAGTTGGAGATAGGATCCATAATTTCTTTGGGCAGGCGAGTCCTTCTCAAGCTCAACACCATTCTCAAATTGCTGATGCATCCTGGC CTGGGGTAAGTGGTAACCCTTGGGCTGGAAGTCAGGGACATATATCCACACCCTTCATATCTGATTTAAAGAGCCGCAATTTGCAGCAACCGGTTGCTAA TTATGATAGAGGATATGGTGGTCAGCCACCACCTGTGCAGCATGATATGAGCTTTCAGCAATCAATTGAAAGAACAGAGCATACTAGAAGTCAATCTCAA AATCAACAGCCAAATACAAATGGATTCTTGCAAAGGGGTTTTCCGCAGTTGATGCACATCAGGGAAACGGCCCTGAAATTCACAAAAGAAATCCAGCAGC CTCTGGGGATTGGCGATATGCATCTTTTACAGCAGCAGTTGATACTCAAACAAATGCAAGAATATCAGAGACAAAGACAACATCAGGTGCAACAGCAGCA GCAAGAATCAAGACAAATTAATATTATGAATCAAGCTTCCCAATCTTTGTTTAATGGCATACCTGTACAGGATGCACCCGGTTATGAAATGCAGCCCGAG GCTATACCAGCTAACTCAAACTGGCAACAGAATAACATGTCTTCAGACATGCGAGGGACATCTAGCAGGCTTGGTTTTCTACCGGAACAAAACCAAGCAG TTCACTTGATGGGCATCGTTCCTCAACAGGTTGAGCAATCTCTTTTTGGTGTCCCCATTTCTGGAGCAAGAGTCCCTTCAAGTCATTTTTCACCCATTCA AATGGATAAGGCTCCCATTCAGAATATGTCTAGCAATAGTAACTCTCTTCTAGCTAATCATTTTAGCGGGTCGTCAAACCTAGTGAATGTTCAAGATGTA ACTTTGGGTTCTGGACAAGGCTATCAGGCGAAAAACATGACTGGGAGAGTAGATAGTCAAGGATTTGATAGTGGAATTAATTTGGAACAACTGCAGCGAG CAAATTCTCAGGAAAGCAGTGGGCCAGCCCAGGAATTTCAGCGGAGGCAAGATGGTGCTGGTCCGTCGGAATCATCACAGGAGAAGACGGTTGTTCAAGC AGCATCTTCTCAGAATGTTGCTACACTAGATCCAACAGAAGAGAGGATTTTGTATGGATCGGATGTTAATTTGTGGGATGCATTTGGCAGCAGTGATCAT GCCAGTTCTGGAACTTTTAATACGATGGAGGCTACAGCCACGTCGGGTGGTGCTTTTTCATCATTACAAAGTGGGACATGGAGTGCTCTTATGCAGTCTG CTGTGGCGGAAACTTCTAGTGCAGATGTAGGCACAGCAGAGGAATGGAGTGGCCAGGCTACTGAACGTCAATCCGGAGACCGGCAGACCTCGGCTGTAAA TGATATCATGAAACTACAAACAGCTTGGGCAGGTAACAGCTTCCAGACTTCCTCAACCTTAACTAATCCCTTCCGCCGCTCAGGTGATGATAATGCAAGT ATGAATACGAATGAGATACAAAGAGTTCATCAATCTGAAGTTGGTTCTTCACAAGACGAGAGTGAGAGGTCGCCGGTGAATTGTTTTCAGAAAGTTCCGC AGCAGTTTGGAAAAGGTAATTCAAAGTGGCTTGATGGTAACTATCAACAAAAATCAGTTGTTGAAGGAAGCCACAATCATGAAAATGTTGTCCGTTCTTC TGATGAATTAAGTGCAAAGAACACATCACAACCAGGCTTCCCTCTCCAGCATTCAATTTCCCAAACTTTCAATAGACAAAATGGTTGGAACTTTATTGAC TCGGTATCCTCAGGATTACCTGTGAAAAGTCAAAGGACTCAAAATCTATTGCAAACCCCCTCAGGCAATGATCACAAGAGCTTGGTAGGACATAGCACTT GGAGAACCGACTCTGTTTCCAACTCAGCTGTTGAAGCAGTGCGTGATAAATTTACAGGGAGTTCCCCTGTCAATACAGGGGACTCTGACCAAAATAGTAC TCTAGATTTGAGCAATATGATAACCAACAATGAGAGCAGTCAAGAAACTCCACAAGGCAAGAATGTTGATGTCTGGAAACATTTTGATCCTCTGGTGAAC CACAAAGGACATGAGATTGCAGGAAGCAGTTCACTCAATATGGATAAGGCCCATGAAGCATTTGAGTCATCTGGAAACAATAGTTTGGGCAATGGTCCTG GCAATGCTCACCAATTCGGTGTCAGCCAGAGCTCGATGAATACCTTTGCCAATCTATCCAATGTCAGGAGAAATAATTGGATAGATACAAATGAATCAGG TACAGTTTCAGTTGGAAAACGTAAGTTATCCAGCCAAAAGCCTCCTGCTCGCAAATTTCAATATCATCCTATGGGGGATGTAAATATTGACTGTGACTCA TCGCATGCAACATCATCTGATTCTCGTTCAGATTCCACAATGCGACAAGTTCCCGGCGGGCTAAGAGGTCAGGAAGAAGTTTGTATTGGAGCATCTAAAT TTACTAGTGGCACTACATCACTTGATAGAGGCATTCATGACTACGCACTAAACAAGACAGTGGCACTGAGTAACAACATGCTTGAACTGCTTCACAAGGT TAATCACTCGAGTGAAACTGGAAACTCCACGTATCCCAGTTCTTCAAGTCAAGATCCTTCTCCTGAGATTCCTGAAACTGAAGCTTATGGAAGAACGTTG CAGCTCCAGCAAAATAGATCTTCTGTTTCTCAAGGGGAGAAGAGTACTACCGGGACGGTTCCCTTGTCCTTTGTTCAGTCTTTCCCACGCTCAGTTGAAA CTTTGGATGGGGATGTGAGGAATAAGACTCATAATATTTTGAGACAAATCAATAGTAATAACCATGGGAGAATTTCTGCTGCCTTATCTCCTGGTTTCCC CTATTCTAGAAATCATGCTCAAGACATGCAGATCCGTGAGACTGGCAGGGAGGCAAATGCCAATCAATCGCTAAATGATTCATTTGATAAGTTTGTCTCC CAGGTGCAGCATACAACTGAGGCTGTTGATAGAGCTCAATCAAGCCAATCAGGACAGACCTCCGTGCTTGACACTTCCTGGGCCACAACATGCAATGATG TTGCTCCCTCTGCTGAGGTTTCCCGCCTTGATAACTGTCAAAATGATAAGGAATCTGATCAACAATTTCCAGTACTGGAAGCAAGATCTACTTCCCAATC CTTTGCAGTATCTGGTTTACATCTGGATGGAGCAAAAAATTTAACTCCAAGGACCAGTATTTCGAATAATCACCCTTCATTCAGCACTCAACCTTTCAGG GGCTTGCCAAATGCGTTCGAGTCCAATGTCCAATCAGACAGCACTATTGAAACAACTTGGCCGCAGAAGCTGGAATACCAAAATCCACAGAGAAGATTTA ACCATTTGTCTGCATCTGGTGTAACTTCTACAAACCCAGAACACCAGGAAAAAGATAATGGCCAGCAGACACCACTGGTTAATGATTTTTCACAGAAGAT GATGAGTCCCTTGCAAGGAAAAGATTCTATTATAAATCGTGTTAGCAGCATGTATGCTTCAAGTACTGTTAGCAATCAAATGGATATTGCAGCTTTTGGA CGCTCTTTAAGACCCAATACCCCTTTGAATCAAAACTACTCGTTGCTGCATGAGGTCCAGGATGTAAACAATAGGGATGTAGATCCAATTGGTAGGAGTT TGAAGCGGCTGAAAGGTTCTGATCTCGACCCACAGCTAGCAGCTTCTGATGGTGGGCAACAGCTATATGGACACACTCACATGGCCAGAGGTGCATCATT GAATAATGCTCCTAGTTCCCTTGATGATAAACGAGTTAGCTCTTCTGGGAGACAAGCAGATGAGCAGCATCAAAATCTACCTTCTAAAGACATGTACGGG TTTAATGGAAACAATTATAGAAATTTTGCTGACAGCAACAGTGTGGTTTCTGGTAGGGGTGAACATGCCCAGGTCAGTCCCCAGATGGCTCCTTCATGGG TTAATCAGTATGGCACCTTCAAACATGGGCAGATTTTGTCCAAATATGATTCTGGGAAAGCTGCTGCTTTGAAGCATGCAGAATTCGCTCTTAGTTCTAG CAGGTCCTCTAACGGACTGCCTACTCCAAGCTCATTAGAGGTTGCCACCATTTGTGGTGATGCATATCAGCATGGTGCTGTCAAGAGAAGTTCAACTCTG ATAGCAAGTGAGGAGTTTTCTTTTCCTCAATTGTCACGCCCCGACACGGTTGATATGAGTTTGTTTGTTGTAAGACCAAAGAAGCGCAAGAATGCCACAT GTGATCTTTTTCCGTGGCATAAAGAGGTGATTAAGATTCCGCAGAGGCTCCAGAATATAAGGTGTATGGCAGAAGTGAAATGGGCCAACGCTGTTAATCG CTTAAGTCAGAAGATGGAAGATGGTGGTGAAATTATAAATGATGGGCCGCCAGCTCTCAAATCGAAGAGAAGACTAATAGTGACGACACAGCTTATGCAG TTACTGCTTCATCCTCCACCGGCCTGGGTTATGTCTGCAGATGCAATTTCACAGTATGAGAGTGCTGCTCATTTTATCGCTCGGTCAACTCTGGGGGATG TATGTGGTTCACTTTCTGGTTTTGCAAGCGACAGTTCTCCACCTCCCGACAGTGGGAACATAAGTCCTGAGAGGTCCCGCATGTCTAAAAGTGCGAGTGA TGAGTACTTCTCAAAAGTTATGGAAGCTCTCATCAGTAAAACGAAGAAAGTAGAAAGCGACTTGCTGAGATTGGACAGGAGCATGTCAATATTAGACTTG AGAGTAGAATGTGAAGATTTGGAGAAGTTCTCAGTCATAAATCGGTTTGCCAAGTTCCATGGACCGGGGCAAACAGGGGGAGGAGCAGCAGACATTTCGT CGACTTCGAATGCACAAAAGTTGTTTCTGCAGAGATATGTTACTGCAGTTCCATTTCCTAGGAATATCCCTGACAGGGAGCCAGATGAGATAGGAGATGG GTGTCCTGCCTTATAA
AA sequence Show only first row Show all	>Lus10021162 pacid=23182443 polypeptide=Lus10021162 locus=Lus10021162.g ID=Lus10021162.BGIv1.0 annot-version=v1.0 MPGNEVGDRIHNFFGQASPSQAQHHSQIADASWPGVSGNPWAGSQGHISTPFISDLKSRNLQQPVANYDRGYGGQPPPVQHDMSFQQSIERTEHTRSQSQ NQQPNTNGFLQRGFPQLMHIRETALKFTKEIQQPLGIGDMHLLQQQLILKQMQEYQRQRQHQVQQQQQESRQINIMNQASQSLFNGIPVQDAPGYEMQPE AIPANSNWQQNNMSSDMRGTSSRLGFLPEQNQAVHLMGIVPQQVEQSLFGVPISGARVPSSHFSPIQMDKAPIQNMSSNSNSLLANHFSGSSNLVNVQDV TLGSGQGYQAKNMTGRVDSQGFDSGINLEQLQRANSQESSGPAQEFQRRQDGAGPSESSQEKTVVQAASSQNVATLDPTEERILYGSDVNLWDAFGSSDH ASSGTFNTMEATATSGGAFSSLQSGTWSALMQSAVAETSSADVGTAEEWSGQATERQSGDRQTSAVNDIMKLQTAWAGNSFQTSSTLTNPFRRSGDDNAS MNTNEIQRVHQSEVGSSQDESERSPVNCFQKVPQQFGKGNSKWLDGNYQQKSVVEGSHNHENVVRSSDELSAKNTSQPGFPLQHSISQTFNRQNGWNFID SVSSGLPVKSQRTQNLLQTPSGNDHKSLVGHSTWRTDSVSNSAVEAVRDKFTGSSPVNTGDSDQNSTLDLSNMITNNESSQETPQGKNVDVWKHFDPLVN HKGHEIAGSSSLNMDKAHEAFESSGNNSLGNGPGNAHQFGVSQSSMNTFANLSNVRRNNWIDTNESGTVSVGKRKLSSQKPPARKFQYHPMGDVNIDCDS SHATSSDSRSDSTMRQVPGGLRGQEEVCIGASKFTSGTTSLDRGIHDYALNKTVALSNNMLELLHKVNHSSETGNSTYPSSSSQDPSPEIPETEAYGRTL QLQQNRSSVSQGEKSTTGTVPLSFVQSFPRSVETLDGDVRNKTHNILRQINSNNHGRISAALSPGFPYSRNHAQDMQIRETGREANANQSLNDSFDKFVS QVQHTTEAVDRAQSSQSGQTSVLDTSWATTCNDVAPSAEVSRLDNCQNDKESDQQFPVLEARSTSQSFAVSGLHLDGAKNLTPRTSISNNHPSFSTQPFR GLPNAFESNVQSDSTIETTWPQKLEYQNPQRRFNHLSASGVTSTNPEHQEKDNGQQTPLVNDFSQKMMSPLQGKDSIINRVSSMYASSTVSNQMDIAAFG RSLRPNTPLNQNYSLLHEVQDVNNRDVDPIGRSLKRLKGSDLDPQLAASDGGQQLYGHTHMARGASLNNAPSSLDDKRVSSSGRQADEQHQNLPSKDMYG FNGNNYRNFADSNSVVSGRGEHAQVSPQMAPSWVNQYGTFKHGQILSKYDSGKAAALKHAEFALSSSRSSNGLPTPSSLEVATICGDAYQHGAVKRSSTL IASEEFSFPQLSRPDTVDMSLFVVRPKKRKNATCDLFPWHKEVIKIPQRLQNIRCMAEVKWANAVNRLSQKMEDGGEIINDGPPALKSKRRLIVTTQLMQ LLLHPPPAWVMSADAISQYESAAHFIARSTLGDVCGSLSGFASDSSPPPDSGNISPERSRMSKSASDEYFSKVMEALISKTKKVESDLLRLDRSMSILDL RVECEDLEKFSVINRFAKFHGPGQTGGGAADISSTSNAQKLFLQRYVTAVPFPRNIPDREPDEIGDGCPAL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07940			unknown protein		Lus10021162 [exp]	0	1
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10025263 [exp]	1.7	0.9438
AT3G24870			Helicase/SANT-associated, DNA ...		Lus10011850 [exp]	2.2	0.9348
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Lus10032830 [exp]	3.2	0.9422
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Lus10017398 [exp]	4.2	0.9361
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Lus10018479 [exp]	6.7	0.8866
AT1G24300			GYF domain-containing protein ...		Lus10032021 [exp]	7.4	0.9190
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Lus10033321 [exp]	8.4	0.9206
AT2G25730			unknown protein		Lus10007687 [exp]	8.5	0.9216
AT3G13225			WW domain-containing protein (...		Lus10010578 [exp]	9.5	0.9177
AT3G11960			Cleavage and polyadenylation s...		Lus10017295 [exp]	13.0	0.9135

Compare expression of checked genes

Lus10021162 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.