Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G02100 192 / 7e-57 UDP-Glycosyltransferase superfamily protein (.1) AT1G78270 143 / 2e-38 ATUGT85A4 UDP-glucosyl transferase 85A4 (.1) AT1G22360 140 / 2e-37 ATUGT85A2, AT2 UDP-glucosyl transferase 85A2 (.1.2) AT1G22370 140 / 2e-37 ATUGT85A5 UDP-glucosyl transferase 85A5 (.1.2) AT1G22340 139 / 6e-37 ATUGT85A7 UDP-glucosyl transferase 85A7 (.1) AT1G22400 137 / 2e-36 ATUGT85A1, UGT85A1 ARABIDOPSIS THALIANA UDP-GLUCOSYL TRANSFERASE 85A1, UDP-Glycosyltransferase superfamily protein (.1) AT1G22380 133 / 6e-35 ATUGT85A3 UDP-glucosyl transferase 85A3 (.1) AT2G36970 130 / 1e-33 UDP-Glycosyltransferase superfamily protein (.1) AT3G22250 126 / 2e-32 UDP-Glycosyltransferase superfamily protein (.1) AT2G43820 117 / 4e-29 SGT1, ATSAGT1, GT, UGT74F2 UDP-glucose:salicylic acid glucosyltransferase 1, Arabidopsis thaliana salicylic acid glucosyltransferase 1, UDP-glucosyltransferase 74F2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040533 [exp] 586 / 0 AT3G02100 256 / 1e-80 UDP-Glycosyltransferase superfamily protein (.1) Lus10015749 [exp] 228 / 1e-70 AT3G02100 274 / 6e-87 UDP-Glycosyltransferase superfamily protein (.1) Lus10003454 [exp] 224 / 4e-69 AT3G02100 268 / 1e-84 UDP-Glycosyltransferase superfamily protein (.1) Lus10003453 [exp] 223 / 8e-69 AT3G02100 276 / 6e-88 UDP-Glycosyltransferase superfamily protein (.1) Lus10015745 [exp] 221 / 7e-68 AT3G02100 288 / 1e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10003455 [exp] 220 / 1e-67 AT3G02100 291 / 1e-93 UDP-Glycosyltransferase superfamily protein (.1) Lus10015744 [exp] 218 / 7e-67 AT3G02100 271 / 6e-86 UDP-Glycosyltransferase superfamily protein (.1) Lus10015751 [exp] 213 / 1e-64 AT3G02100 281 / 7e-90 UDP-Glycosyltransferase superfamily protein (.1) Lus10034699 [exp] 207 / 1e-62 AT3G02100 285 / 2e-91 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G084900 [exp] 308 / 7e-102 AT3G02100 307 / 9e-100 UDP-Glycosyltransferase superfamily protein (.1) Potri.013G022800 [exp] 275 / 8e-89 AT3G02100 302 / 9e-98 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G091500 [exp] 246 / 6e-78 AT3G02100 454 / 9e-158 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G123500 [exp] 243 / 2e-76 AT3G02100 439 / 9e-152 UDP-Glycosyltransferase superfamily protein (.1) Potri.004G119700 [exp] 221 / 6e-68 AT3G02100 457 / 8e-159 UDP-Glycosyltransferase superfamily protein (.1) Potri.007G049600 [exp] 152 / 7e-42 AT2G23260 422 / 1e-144 UDP-glucosyl transferase 84B1 (.1) Potri.016G022000 [exp] 150 / 4e-41 AT1G22360 499 / 1e-174 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G019400 [exp] 148 / 2e-40 AT3G22250 494 / 3e-173 UDP-Glycosyltransferase superfamily protein (.1) Potri.016G022400 [exp] 148 / 3e-40 AT1G22360 495 / 4e-173 UDP-glucosyl transferase 85A2 (.1.2) Potri.016G021500 [exp] 147 / 4e-40 AT1G22360 501 / 3e-175 UDP-glucosyl transferase 85A2 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021163 pacid=23182383 polypeptide=Lus10021163 locus=Lus10021163.g ID=Lus10021163.BGIv1.0 annot-version=v1.0 ATGGAGATCAGCAGTAGATCCAGAGAAGAGGCTCATTTCCTGCTGGTACCATACCCAATACAAGGGCACACATCACCAATGTTGAAGCTAGCTCACCGGT TGGTCAACCATGGAAGCAAAGTAACCTTTTTTACTACAGAGTTTGCGCATTCACGAATGAAGAAGAGCTCAGTAGCTGCTGATTCACTTGGCTTCGATAT AGTATCGTCCCCTGATGGATTGCCCTTAGATCATGAACGCAAAGATGAGGTTGAAGTAGGCCAGAGTATCTCTAGAGTAATGCCTTGTTATTTCCGGGAC TTCCTCCTCCACAATAACAATGCAAAGATGATCAGCTGTGTTGTTGCTGATTCTATTATGCCGTGGGCTATGGATATTGCCAAGAGTGCTGGAATCACGA CTGCTGTTTTCTTTGTCTCGTCTCCAGGGAACTTGTCTATGGTCCTCCAAATACCCACCCTTATTCAATCTGGAATCATTAATCCTCAAAATGGGAGCCC CATACAAGACAAGGAAGTTCAGCTGTCCCCAAATCTGCCGATACTCAAAAGTCCCGATTTCACATGGAATATCCCGGAAGGAAGCGACGAGTACATGAAA ACGATGGTGTTCCATGCCATCAACGCAATAAACCAGACTGTACCTGCCGCTGATTGGGTCATATGCAACTGGTTTTCGGAACTCGACCCTTCAGCAGATA CCTTGCTCCCTCGAATCCTCCCTGTAGGTCCATTGCTTTCAGGTGGCCATCAAGCCATTGGCAACCTTTGGTCGGAGGACTCAACTTGCTTAGCTTGGCT CGATACCCACCCTCCCGGTTCAGTCGTTTACATTGCCTTTGGCAGCACCACCAAGTTCAACCAAGCTCAGGTCAGAGAACTAGCACTTGGCCTCGAACTC GTAAATCGCCCCTTCCTCTGGGTTGTCCGATCAGATCTCATTGACAACAATAATGGCGACGACGACGAAACCATTAGCATGGACAGATTGTTTAGGGACA AACTAGGTAGCATCGGAAAGGTTGTCGGATGGGCGCCTCAGGAGAAGGCTGAGATTGTGCTAATCTCTACAGCTAACATCTGA
AA sequence Show only first row Show all	>Lus10021163 pacid=23182383 polypeptide=Lus10021163 locus=Lus10021163.g ID=Lus10021163.BGIv1.0 annot-version=v1.0 MEISSRSREEAHFLLVPYPIQGHTSPMLKLAHRLVNHGSKVTFFTTEFAHSRMKKSSVAADSLGFDIVSSPDGLPLDHERKDEVEVGQSISRVMPCYFRD FLLHNNNAKMISCVVADSIMPWAMDIAKSAGITTAVFFVSSPGNLSMVLQIPTLIQSGIINPQNGSPIQDKEVQLSPNLPILKSPDFTWNIPEGSDEYMK TMVFHAINAINQTVPAADWVICNWFSELDPSADTLLPRILPVGPLLSGGHQAIGNLWSEDSTCLAWLDTHPPGSVVYIAFGSTTKFNQAQVRELALGLEL VNRPFLWVVRSDLIDNNNGDDDETISMDRLFRDKLGSIGKVVGWAPQEKAEIVLISTANI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02100			UDP-Glycosyltransferase superf...		Lus10021163 [exp]	0	1
AT1G09157			Protein of unknown function (D...		Lus10030466 [exp]	1.4	0.8524
AT1G34050			Ankyrin repeat family protein ...		Lus10018757 [exp]	5.8	0.8048
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10017004 [exp]	7.9	0.7891
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10021328 [exp]	8.0	0.7827
					Lus10011017 [exp]	8.2	0.8010
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10014175 [exp]	10.1	0.8029
					Lus10028090 [exp]	11.2	0.7931
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10008975 [exp]	18.0	0.7442
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10001010 [exp]	20.7	0.7965
AT1G20500			AMP-dependent synthetase and l...		Lus10020473 [exp]	24.0	0.7515

Compare expression of checked genes

Lus10021163 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.