Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23430 1031 / 0 PHO1, ATPHO1 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) AT1G68740 608 / 0 PHO1;H1 EXS (ERD1/XPR1/SYG1) family protein (.1) AT3G29060 442 / 7e-144 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G14040 416 / 3e-133 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G26730 410 / 3e-132 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G35350 408 / 4e-131 EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03260 402 / 5e-128 EXS (ERD1/XPR1/SYG1) family protein (.1) AT1G69480 399 / 1e-127 EXS (ERD1/XPR1/SYG1) family protein (.1) AT4G25350 398 / 1e-127 SHB1 SHORT HYPOCOTYL UNDER BLUE1, EXS (ERD1/XPR1/SYG1) family protein (.1) AT2G03240 398 / 2e-126 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011799 [exp] 1394 / 0 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10019155 [exp] 628 / 0 AT1G68740 1065 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10034400 [exp] 620 / 0 AT1G68740 1057 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030439 [exp] 394 / 5e-125 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10037147 [exp] 383 / 6e-121 AT1G14040 1071 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10036779 [exp] 379 / 2e-119 AT1G14040 1080 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10019230 [exp] 367 / 1e-117 AT1G69480 676 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030440 [exp] 374 / 2e-117 AT1G14040 1048 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10030438 [exp] 372 / 5e-117 AT1G14040 976 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069000 [exp] 1184 / 0 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G169400 [exp] 1128 / 0 AT3G23430 1019 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Potri.008G110800 [exp] 763 / 0 AT1G68740 1096 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G132300 [exp] 759 / 0 AT1G68740 1139 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.017G086800 [exp] 445 / 7e-145 AT3G29060 853 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.008G090400 [exp] 410 / 1e-131 AT1G14040 1037 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165800 [exp] 405 / 1e-129 AT1G14040 1032 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G165300 [exp] 403 / 1e-128 AT1G14040 1022 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.010G164900 [exp] 398 / 1e-126 AT1G14040 992 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Potri.016G032900 [exp] 367 / 3e-115 AT1G14040 865 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [flax] [poplar] SPX SPX domain CL0182 [flax] [poplar] IT PF03124 [flax] [poplar] EXS EXS family
Representative CDS sequence Show only first row Show all	>Lus10021164 pacid=23171387 polypeptide=Lus10021164 locus=Lus10021164.g ID=Lus10021164.BGIv1.0 annot-version=v1.0 ATGGTGAAGTTTTCAAAAGAGCTAGAAGCTCAGCTTATCCCAGAATGGAAAGAAGCATTTGTCAATTACTGGCAGCTGAAGAAGCACATCAAGAAGCTTA AATTTGCCACTCAACCTGCAAAACCTTGTTCCAAACTCATCATCAACCATGCCCATCTCGGCTTCTTCTCCATTTTCGACCCCATTCGATCCCTCTTCAC CTCCTGCTCTCCCTCCGCCTCCTCCGAGATCATTCAGGTGAGAAGGAAAATGATGGATGGCGGCGACCAAGAAGTCTACCAAACTGAGCTTGTCCAGCTC TTCTCCGAGGAGGACGAGATGAGGGCATTTTTTGGGAGACTGGACGAGGAGCTGAACAAAGTGAACCAGTTCTACAAGGCGAAAGAGAAGGAGTTCATGC AGAGGGGAGAAATCCTGCAGAAGCAGCTGGAGATCTTGGTTGACCTCAAGCGGATTCTCACCGACCGCCGCCGTCAGTTGAAGTCATCCAACTCCGTTGG TCGTTCCTCTTGGACGTCCTCTTCCCCTCGTACCTCCGATTTCTCTGAGGGAGGGCTACAGAGCGAGTTGAGCGGAGGCGAGACGCCGACGTCGATGGAG CAGTCAGAGACGGAAGAAGTGAGAGCGGCGCTGGAGAGGAACGGGGTGAGCTTCGTGAATTCAAACACGCGGTCCAAAACAAAGAAAGGGAACGGAAACA ATAACAACAACAATAAGCCGAAGATGGCACTGAGGGTGGACATTCCAGCCACCACACCGACGAAGACGATCGCTGCCGTTACGTCAATGTTGTGGGAAGA TCTGGTGAACAACCCGAAAAAGGGAGAAGCCGGCGCAGGAGACTACATAAACCGAAAGAAAGTGCAGTGCGCCGAGAAAATGATCCGGAGTGCATTTGTT GAGTTGTACCGAGGCCTTGGCCTCCTCAAAACTTACAGCTCACTCAACATGGTGGCGTTTACGAAAATACTCAAGAAATTCGACAAGGTGGCAAACCAGC AGGCATCACCAAGTTATCTAAGAGAGGTGAAGAAGTCTCACTTCATTAGCTCTGACAAGGTGGTGAGGCTAATGGATGAAGTGGAGTGCATATTCACAAA GCACTTCGCCAACAACGATAGGAAAAAGGCAATGAAATTCCTCCGGCCACAGCAACAAAAGGAGTCACACATGGTCACCTTTTTCGTCGGCTTGTCCACA GGCTGTTTCGTCTCACTGTTCATCGTATACGCAATTTTGGCACATCTTACTGGCATCTTCAGCCCCACTACTGGCCGCTCCTATGTTGAAACTGTCTACC CTGTTTTCAGTGTGTTTGCATTGCTGAGCTTGCACGTGTTCATGTACGGGTGCAACCTGTTCATGTGGAAGGGGACTCGGATCAACTATAACTTCATCTT TGAATTCCAACCCACCACTTCCCTCAAGTACAGAGACGCCTTCCTCATTTGCACCACTTTCATGACCTCTGTCATCAGTGCCATGGTCCTCCATCTCCTC TTAAGGGCTAGTGGCTTCTCCCCCAGCCAAGTTGATGCCATTCCAGGAGTCATCTGCTTGATATTCTTGGCACTGCTCATTTGTCCATTTGACGTCCTGT ATCGTCCGACACGTTACTACTTCATCCGAGTCATACGCAACATCGTCTTCTCTCCATTCTACAAGGTTCTCATGGTTGACTTCTTCATGGCTGACCAACT CACCAGTCAGATTCCGCTGCTGCGACACATGGAATCGACAGCATGCTACTTCCTAGCTGGGAGTTTCAGGACTCACCAGTACGAGACCTGCCACTCTGGA AGGATGTACAGACAGATTGTTTATGTAATCTCATTTTTGCCTTATTACTGGAGAGCTATGCAGTGTGCAAGAAGATGGTTTGATGAGTCAGACGTGAACC ATTTGGCTAACATGGGGAAGTATGTTTCGGCCATGGTAGCAGCTGGTGCGAGGTTGACGTATGCCAGACAAGAGAACCACTTGTGGTTCTCTATAGTACT AGCTACTTCCGCATTCGCCACCTTGTACCAGTTGTACTGGGATTTCGTCAAGGACTGGGGGCTTATGAACCCCAAGTCAAAGAATCCTTGGCTAAGAGAT GAATTGATCCTCAAGAGCAAATCCATCTACTACATCTCCATGGGGTTGAATGTCGTGTTGAGAGTTGCATGGGTTGAAGCAGTGATGGGTTTCCGGTTCA ACAGTATTGTCGAGTCAAGAATGTTGGACTTCTTCTTGGCTTCTCTGGAGGTTATTCGCCGAGGACACTGGAACTACTACAGGTTGGAGAATGAGCATTT GAACAACGTTGGCAAGTTCAGGGCAGTCAAGTCTGTTCCTTTACCATTTCGCGACACAGATTCAGACTGA
AA sequence Show only first row Show all	>Lus10021164 pacid=23171387 polypeptide=Lus10021164 locus=Lus10021164.g ID=Lus10021164.BGIv1.0 annot-version=v1.0 MVKFSKELEAQLIPEWKEAFVNYWQLKKHIKKLKFATQPAKPCSKLIINHAHLGFFSIFDPIRSLFTSCSPSASSEIIQVRRKMMDGGDQEVYQTELVQL FSEEDEMRAFFGRLDEELNKVNQFYKAKEKEFMQRGEILQKQLEILVDLKRILTDRRRQLKSSNSVGRSSWTSSSPRTSDFSEGGLQSELSGGETPTSME QSETEEVRAALERNGVSFVNSNTRSKTKKGNGNNNNNNKPKMALRVDIPATTPTKTIAAVTSMLWEDLVNNPKKGEAGAGDYINRKKVQCAEKMIRSAFV ELYRGLGLLKTYSSLNMVAFTKILKKFDKVANQQASPSYLREVKKSHFISSDKVVRLMDEVECIFTKHFANNDRKKAMKFLRPQQQKESHMVTFFVGLST GCFVSLFIVYAILAHLTGIFSPTTGRSYVETVYPVFSVFALLSLHVFMYGCNLFMWKGTRINYNFIFEFQPTTSLKYRDAFLICTTFMTSVISAMVLHLL LRASGFSPSQVDAIPGVICLIFLALLICPFDVLYRPTRYYFIRVIRNIVFSPFYKVLMVDFFMADQLTSQIPLLRHMESTACYFLAGSFRTHQYETCHSG RMYRQIVYVISFLPYYWRAMQCARRWFDESDVNHLANMGKYVSAMVAAGARLTYARQENHLWFSIVLATSAFATLYQLYWDFVKDWGLMNPKSKNPWLRD ELILKSKSIYYISMGLNVVLRVAWVEAVMGFRFNSIVESRMLDFFLASLEVIRRGHWNYYRLENEHLNNVGKFRAVKSVPLPFRDTDSD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10021164 [exp]	0	1
AT2G39530			Uncharacterised protein family...		Lus10023416 [exp]	2.4	0.9552
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10038790 [exp]	2.8	0.9621
AT2G22660			Protein of unknown function (d...		Lus10004273 [exp]	4.0	0.9482
AT5G12950			Putative glycosyl hydrolase of...		Lus10031258 [exp]	4.1	0.9353
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10023048 [exp]	5.0	0.9475
AT2G21940		ATSK1	shikimate kinase 1 (.1.2.3.4.5...		Lus10035843 [exp]	7.9	0.9411
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10011799 [exp]	7.9	0.9049
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10022349 [exp]	10.0	0.9257
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10017466 [exp]	10.6	0.9238
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031265 [exp]	10.7	0.9473

Compare expression of checked genes

Lus10021164 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.