Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23410 149 / 3e-41 ATFAO3 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) AT4G28570 148 / 8e-41 Long-chain fatty alcohol dehydrogenase family protein (.1) AT1G03990 140 / 4e-38 Long-chain fatty alcohol dehydrogenase family protein (.1) AT4G19380 94 / 9e-22 Long-chain fatty alcohol dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011800 [exp] 236 / 2e-76 AT3G23410 527 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Lus10022903 [exp] 152 / 6e-42 AT4G28570 837 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10024922 [exp] 150 / 3e-41 AT4G28570 833 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10003621 [exp] 149 / 5e-41 AT4G28570 853 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10008239 [exp] 148 / 1e-40 AT4G28570 852 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10037257 [exp] 104 / 2e-25 AT4G19380 765 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Lus10035673 [exp] 104 / 2e-25 AT4G19380 793 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069100 [exp] 175 / 2e-50 AT3G23410 851 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.008G169300 [exp] 165 / 6e-47 AT3G23410 855 / 0.0 ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, fatty alcohol oxidase 3 (.1) Potri.004G234900 [exp] 89 / 6e-20 AT4G19380 864 / 0.0 Long-chain fatty alcohol dehydrogenase family protein (.1) Potri.002G259700 [exp] 53 / 6e-08 AT1G03990 300 / 5e-93 Long-chain fatty alcohol dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05199 [flax] [poplar] GMC_oxred_C GMC oxidoreductase CL0063 [flax] [poplar] NADP_Rossmann PF00732 [flax] [poplar] GMC_oxred_N GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Lus10021165 pacid=23171359 polypeptide=Lus10021165 locus=Lus10021165.g ID=Lus10021165.BGIv1.0 annot-version=v1.0 ATGCACTTGTTCCACAATCTCTCAATGATTTTGCACTCAAAAAGCTCAAGTACAATGAATCCTCAAACGGGAGACAAGAAAGGTACGGACTCGACTTGGC TGGTGGATGCAGTGGAACAAGGCGCAGTGATTCTTACAGGTTGCAAAGCAGAGAGATTCATACTCCAAGAAAACAAAGGATCTGACGGCAGAAGAAGGAA ACTGAGATGCTCAGGAGTTACAGCGAGAATCATGGGTGGCTGCAAAATCCAACCGAAGCTGGAAATTCAAGCCAAGGTAACTATTTCAGCCTGTGGCTCT TTACAAACTCCTCCCCTTATGATTAGAAGCGGGTTAAAGAATAAGCACATAGGGAGAAACCTTCATCTCCACCCAGATGCAATGGCTTGGGGGTACTTCC CGGAATCAAATGCAGAACTGAAAGGAGTTGGAGGAGTTTATAGAGAGTGTGACGGCATCGAGAGGGGCAATGTCTGTAGGGGAGGAGGAATGGATGATGT ATACTTCCGCTCATCAGATGGGGAGCTGCAGAAGGGGTTTGGAGAAGAAGATGGCGCGGTTGATGAGAATGGAGAGAGTTGGGAAGCTAAAGGATTGTTC GTTTGTGACGGTAGTGTTCTTCCAAGTGCAGTTGGTGTCAACCCTATGATTGCTATTCAGTCCACTGCGTATTGTTTATCCAAGAGAATTGCGCAGACGC TGAAGATCACATCAGCATGA
AA sequence Show only first row Show all	>Lus10021165 pacid=23171359 polypeptide=Lus10021165 locus=Lus10021165.g ID=Lus10021165.BGIv1.0 annot-version=v1.0 MHLFHNLSMILHSKSSSTMNPQTGDKKGTDSTWLVDAVEQGAVILTGCKAERFILQENKGSDGRRRKLRCSGVTARIMGGCKIQPKLEIQAKVTISACGS LQTPPLMIRSGLKNKHIGRNLHLHPDAMAWGYFPESNAELKGVGGVYRECDGIERGNVCRGGGMDDVYFRSSDGELQKGFGEEDGAVDENGESWEAKGLF VCDGSVLPSAVGVNPMIAIQSTAYCLSKRIAQTLKITSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G28570			Long-chain fatty alcohol dehyd...		Lus10021165 [exp]	0	1
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10014606 [exp]	2.0	0.9604
AT3G62930			Thioredoxin superfamily protei...		Lus10005940 [exp]	3.3	0.8905
AT4G36945			PLC-like phosphodiesterases su...		Lus10019339 [exp]	3.5	0.9361
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028883 [exp]	3.6	0.8793
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032073 [exp]	4.2	0.9399
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Lus10032074 [exp]	4.9	0.9325
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10033052 [exp]	5.5	0.9190
AT5G25840			Protein of unknown function (D...		Lus10000571 [exp]	7.1	0.9308
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10017765 [exp]	7.9	0.8974
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10021039 [exp]	8.0	0.8628

Compare expression of checked genes

Lus10021165 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.