Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14310 787 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011802 [exp] 1376 / 0 AT4G14310 819 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G169200 [exp] 909 / 0 AT4G14310 814 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.010G069200 [exp] 905 / 0 AT4G14310 830 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021166 pacid=23171367 polypeptide=Lus10021166 locus=Lus10021166.g ID=Lus10021166.BGIv1.0 annot-version=v1.0 ATGAAACTTAATAAGTTCGGTGGAGAGAAATCTGATTCGGATTCCAAACTTGATCGTGTGAGAGTATCTGGTCATAAATCTGCTGGTAAAGTTAGGGTTT CTGAGAACCGGAAAGAGACGAGCCTGATGGAAGATGGTACAAGAAATAAGGTTAGTGATGGCTATCCAAGCAGGCTGCACGAGAAGCTTGCTTTCTTGGA AGGGAAAGTGAAGAGAATTGCTTCTGATATCAAGAGAACCAAGGAGATCTTGGATATGAACAACCCTGATGCTTCCAAGGTTGTACTTTCAGATATCCAA GAGAAGATTTTTAGTATAGAGCAGGCGATGGTACATGTTGGCGATTCTTCTAAGGGAGATGTGAAAGGTAAGTTAAAGAGCAAGGCTGTGGACAAGAATG AAAACGAAGCAGTGGACCAGGCTAAGATTCTGGTTAAAGGATTAAACAGCGAGGAGCTTGAAGCAAGGCTTTTCCCTCATCAGAAGTTGCTAAGAAATAG GACATCGTTGAAAGTCAGGTCAGGAAGTTCTCAAAGTCACGATGGCAACTGTAGTGCTGTGGAATCTATAGACAAGGTGAAGGTAGATGACAAATTGTTG ATCTCTGCTGAGGTGAATCCAATAGAATTAGACTTTTTAGATTCGCTAAGTAGAGAAAACAAGTGTGGTGAAGGGAGTGGAAGAGCAGGATCGGAGCTTA TTGAAGTTCAAGATGTGGAAGGTGTTGAAGCCGCTCACTCAGAAAACTCCGCGAAGATGTATGATGGCAAAGATGAAGATGCATTTGCTCTTACAGCCGA TGAAACACTGGAAGAATTTGATGATGTAGAAAACAAACCAACTGCTGGCGAGGAGATGGAGATGGATGAGACTAATTTCCAACAACTGAATGTGATAGGT GTCAAGACTTCAACAGGAGGCTGGTTTGTATCAGAGGGAGAGTCGGTTCTTCTAGCTCATGATGACGGGTCCTGCTCATTTTATGATATTGCCAACTCCG AGGAGAAAGCAGTATACAAGCCTCCATCAGGGATCTCACCAAGTATGTGGAGAGATTGTTGGATAATTAGAGCACCTGGTGCTGATGGTTGTTCTACAAA ATATGTCGTGGCTGCATCCGCAGGGAATTCACTTGATGCTGGTTTCTGTTCTTGGGATTTCTATACCAAAAGTGTACGAGCTTTCCACATTGAGGACGGA GCAACAACTACTGCTAGAACCATACTTGGTCCATTGCCCAATACTTCCATACTCAGACGGACTACTTTGTCTAGTGTGTTGCAACCAGAAAGTCGACAAT GGTGGTGCAGACCCTGTGGACCTCTCATCGTCTCTGCTGCCTGCTCCCAGCGAGCAGTCAAGATATTTGATATACGGGATGGCGATCAGATAATGAGATG GGAACTGCAGAAGCCGATGATGGGAATGGATCATTCAAGCCCTGTGCAGTGGAGGAACCGAGGGAAAATCATTTTAGCTGAATCAGAATCGATTTCTGTA TGGGATGTGAACTCTTTGAGTCCTCAGTCGCTGTCAACAATCCCATTGTCCGGTCGAAAAATTACAGCTCTTAGTGTGGTCAACACTGATGCAGAGCTGG GTGGAGGAGTTCGGCAAAGGGTAACTTCCTCTGAAGCGGAAGGAAATGATGGTGTGTTCTGCACAACTGATACTATCAACGTGATGGATCTTCGAAACCC ATCTGGGATAGGTCTGAAAATACCCAAAATGGGAGTGGATGCTCAGTCAGTCTTCACTCGTGGAGATTCGATCTATGTAGGCTGCACTAGTGCAAGAAGT GGAGGGAAGAAGCAGCCATGTTCACAAGTGCAGCAGTTCTGCCTGCGGAAACAAAGGATAGTGAACAGCTATTCTCTGCCGGAATCAGAAGCACACTCGT ACCACTCTGCCATTACTCAGGTATGGGGGAACTCAAACTATGTGATGGCAGTATCTGGTCTCGGACTTTTTGTGTTCGATACGTTGAGAGATGATGGACA GCAGCAGGCTGATTATGGAAGTGGGCAGAAGGTTAAAGAAGTGATCGGCCCTGATGACTTGTATTCTCCTACGTTCGATTACTTGAGTTCCCGTGTTCTT CTTATATCAAGGGACCGTCCAGCGCTTTATAGGCACTTAGTGTAG
AA sequence Show only first row Show all	>Lus10021166 pacid=23171367 polypeptide=Lus10021166 locus=Lus10021166.g ID=Lus10021166.BGIv1.0 annot-version=v1.0 MKLNKFGGEKSDSDSKLDRVRVSGHKSAGKVRVSENRKETSLMEDGTRNKVSDGYPSRLHEKLAFLEGKVKRIASDIKRTKEILDMNNPDASKVVLSDIQ EKIFSIEQAMVHVGDSSKGDVKGKLKSKAVDKNENEAVDQAKILVKGLNSEELEARLFPHQKLLRNRTSLKVRSGSSQSHDGNCSAVESIDKVKVDDKLL ISAEVNPIELDFLDSLSRENKCGEGSGRAGSELIEVQDVEGVEAAHSENSAKMYDGKDEDAFALTADETLEEFDDVENKPTAGEEMEMDETNFQQLNVIG VKTSTGGWFVSEGESVLLAHDDGSCSFYDIANSEEKAVYKPPSGISPSMWRDCWIIRAPGADGCSTKYVVAASAGNSLDAGFCSWDFYTKSVRAFHIEDG ATTTARTILGPLPNTSILRRTTLSSVLQPESRQWWCRPCGPLIVSAACSQRAVKIFDIRDGDQIMRWELQKPMMGMDHSSPVQWRNRGKIILAESESISV WDVNSLSPQSLSTIPLSGRKITALSVVNTDAELGGGVRQRVTSSEAEGNDGVFCTTDTINVMDLRNPSGIGLKIPKMGVDAQSVFTRGDSIYVGCTSARS GGKKQPCSQVQQFCLRKQRIVNSYSLPESEAHSYHSAITQVWGNSNYVMAVSGLGLFVFDTLRDDGQQQADYGSGQKVKEVIGPDDLYSPTFDYLSSRVL LISRDRPALYRHLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14310			Transducin/WD40 repeat-like su...		Lus10021166 [exp]	0	1
AT5G05510			Mad3/BUB1 homology region 1 (....		Lus10040947 [exp]	10.5	0.8776
AT2G42260		PYM, UVI4	POLYCHOME, uv-b-insensitive 4 ...		Lus10008728 [exp]	17.0	0.8576
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10007629 [exp]	17.2	0.8710
AT4G12740			HhH-GPD base excision DNA repa...		Lus10001182 [exp]	25.5	0.8256
AT1G10930		ATSGS1, RECQL4A...	DNA helicase (RECQl4A) (.1)		Lus10015467 [exp]	25.8	0.8409
AT4G24710			P-loop containing nucleoside t...		Lus10019473 [exp]	27.1	0.8581
AT2G33560		BUBR1	BUB1-related (BUB1: budding un...		Lus10030714 [exp]	35.2	0.8542
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10040514 [exp]	36.6	0.8503
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10008424 [exp]	38.8	0.8256
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10009366 [exp]	42.3	0.8482

Compare expression of checked genes

Lus10021166 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.