Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14330 706 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G21270 139 / 5e-34 KATAP, ATK1 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) AT4G05190 138 / 2e-33 ATK5 kinesin 5 (.1) AT2G37420 135 / 1e-32 ATP binding microtubule motor family protein (.1) AT3G45850 132 / 2e-31 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 130 / 8e-31 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G36200 129 / 2e-30 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G27180 125 / 2e-29 KATB, ATK2 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA B, kinesin 2 (.1) AT1G18550 123 / 6e-29 ATP binding microtubule motor family protein (.1) AT2G22610 123 / 1e-28 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011804 [exp] 1030 / 0 AT4G14330 759 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025304 [exp] 137 / 4e-33 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10024429 [exp] 137 / 6e-33 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10007629 [exp] 132 / 2e-31 AT4G21270 975 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10018384 [exp] 130 / 5e-31 AT4G21270 989 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Lus10014216 [exp] 129 / 1e-30 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10009073 [exp] 128 / 3e-30 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10005582 [exp] 128 / 4e-30 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10017016 [exp] 128 / 4e-30 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G169000 [exp] 767 / 0 AT4G14330 915 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.010G069400 [exp] 759 / 0 AT4G14330 863 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.006G082900 [exp] 134 / 3e-32 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.011G031200 [exp] 134 / 3e-32 AT4G21270 1109 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Potri.004G031600 [exp] 131 / 2e-31 AT4G21270 1076 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A PROTEIN, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA A, kinesin 1 (.1) Potri.001G233700 [exp] 131 / 3e-31 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.011G131900 [exp] 127 / 3e-30 AT5G54670 1058 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C, kinesin 3 (.1) Potri.005G021100 [exp] 127 / 4e-30 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.006G210700 [exp] 127 / 5e-30 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 127 / 6e-30 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10021167 pacid=23171409 polypeptide=Lus10021167 locus=Lus10021167.g ID=Lus10021167.BGIv1.0 annot-version=v1.0 ATGGCTCCCACTCCGTCTTCTTCCAAACAGAACCACGCCCATAACCCCTTCAAGACTCCCCAATCTAAACACCGCCTCAATTTCAACTCTTCCAGAACCC CAAACCATCACCCGTCTCCTAACCCTAACTCAGCGCTCAAAGAAAACCCTCCAATCGACCACCCAATTGAGGTCATTGGGCGCATCAGGGATTTCCCCGA TCGGAAAGAGAAGCCAGCTCCGGTGTTGAGCGTCACAGCAGATGGCCAGACACTCAGAGTTCGTGCGGAAATCGGCTACAGGGACTTCACCTTGGATGGG GTTTCTTTCTCGGAGAAAGAAGATCTTGATGGGTTCTACCGGAAATTCGTTAAGTCTAGGATCAATGTGGTGAAATTGGGGGAGAAGTGTACGATTATGA TGTACGGACCCACAGGTTCTGGGAAGAGCCACTCCATGTTCGGGTGCCCTAAGCAGCCGGGAATAGTTTACAAGGCGCTCAAGGATATACTTGGAGAAAC TGAAGAAGGGGTTGATGGTGGAGAGAAGGTGGGAATGGCTACTTTTGTTCAGGTCACTGTTCTGGAGATTTACAATGAGGAGATTTATGATCTCTTGTCA ACTAATAGTGGTGGTGGAGGGTTTGGAATCGGCTGGCCTAAGGGTGGGAGTGCGTCTAAGGCAAGACTTGAAGTGATGGGAAAGAAGGCCAAAAATGCTA CTTTCATATCTGGCTCTGAAGCTAACAAAATTCTGAGAGAGATTCAGAAGGTGGAGAAGAAAAGGATAGTTAAGAGCACCTTGTGTAATGAACGAAGTTC CAGGAGTCACTGCATGATAGTTCTCGATGTTCCAACTGTGGGAGGTCGCCTTATGCTTGTGGACATGGCAGGGTCGGAGAACATTGAACAAGCAGGGCAA AGTGGTTTTGAGGCTAAGATGCAGACAGCAAAGATTAATCAAGGGAATATAGCATTGAAAAGAGTGGTTGAGTCGATTGCAAATGGAGATTCCCATGTTC CATTCAGAGATAGCAAGTTGACAATGCTGCTCCAGGATTCATTTGAAGATGATAAGTCAAAGATTCTAATGATTCTTTGTGCAAGTCCAGATCCGAAGGA GATCCACAAGACAATCTGTACCCTTGAATATGGAGCGAAAGCGAAGTGCATTGTCCGTGGCCCTCATACTCCGATCAAAGACAGCGAGGAATCAGGTGCA GGTATGTTGGGATCCAGGGTAGCAGCCATGGACCAGTTTATCTACAAGCTACAGTTGGAAAACAAGCTCAAGGAGAAAGAGAGGAACGAGGCACACAAAC AACTCATGGAGAAAGAGGAAGAAATGGCTGCTTTAAGAAAACAGATTGCAGTGAGGGAAGCTGCTGTAGCACCAAGTGAAGAAGAGATCAACGCCAAGGT GAATGAGCGGACAATGATGATGAAACTCGAATTGGAAAGGAAGTCGGAAGAATGTAAGAAGGCTGCTGAGAAATGTTTCGAGATGGAGAAGAGGAGGATG GAAGAGAAGATATTGGAGCAGCAACAGGAAGTCGAAATGCTAAGGAGACGACTGCAAGAGATCGAACTGGAAAAGGCAAGTCTTCCTCTAGAGAAGACTG CTGCAAAAGATGTGGATGATTGTTGTCGCAGCAGTTTCACAAGTAGACTGTTGGGGGCTTGTGGGGATGATGAGGCAGGGATGGTGAAGTCTATGGACCT CGACATGGGCGATCAGGAAGTATTTGTTCGCGAGGTGAAGTTTGTAGACACAGCAGCTGCAAACATTGGCAGCACTCCTTACTTTCTCCAACCTCAGACT GATGTTGTCTTCGGAACAAGCTATGGAGATAAGTTCAATCTCACTACTGTATTTGAGGAGGAAGAAGTGGAAGAAGAGGATGAAGAGGAACACAAGGTGG AAGAAGAAGTGGAAAAGAAGGTTATAGAAGAAGTGGACACATCAGAGGCTAGCAGGAGAGTAAGAATTCAAAATATTTTCACTCTCTGCGGGAACCAAAG GGAGCTTACAGCAGCAGTTCCTCCTCCCAGCGGATTTGGGGTTGATTGTGGCAAGGAGAACAACCCTAAACTCTTCCCGATAGAGAACATAATTCCACTG CCACTCACACCAGGAGGATCTTGCTTGTCAAAACAGCAGAAGCAAGGTGGTGATGCCTTTTCACCTGAACTTGGACGTCTTAGTTCTACTCCTTTCATCA CTCAGAGAAAGGTTCTAAACTAG
AA sequence Show only first row Show all	>Lus10021167 pacid=23171409 polypeptide=Lus10021167 locus=Lus10021167.g ID=Lus10021167.BGIv1.0 annot-version=v1.0 MAPTPSSSKQNHAHNPFKTPQSKHRLNFNSSRTPNHHPSPNPNSALKENPPIDHPIEVIGRIRDFPDRKEKPAPVLSVTADGQTLRVRAEIGYRDFTLDG VSFSEKEDLDGFYRKFVKSRINVVKLGEKCTIMMYGPTGSGKSHSMFGCPKQPGIVYKALKDILGETEEGVDGGEKVGMATFVQVTVLEIYNEEIYDLLS TNSGGGGFGIGWPKGGSASKARLEVMGKKAKNATFISGSEANKILREIQKVEKKRIVKSTLCNERSSRSHCMIVLDVPTVGGRLMLVDMAGSENIEQAGQ SGFEAKMQTAKINQGNIALKRVVESIANGDSHVPFRDSKLTMLLQDSFEDDKSKILMILCASPDPKEIHKTICTLEYGAKAKCIVRGPHTPIKDSEESGA GMLGSRVAAMDQFIYKLQLENKLKEKERNEAHKQLMEKEEEMAALRKQIAVREAAVAPSEEEINAKVNERTMMMKLELERKSEECKKAAEKCFEMEKRRM EEKILEQQQEVEMLRRRLQEIELEKASLPLEKTAAKDVDDCCRSSFTSRLLGACGDDEAGMVKSMDLDMGDQEVFVREVKFVDTAAANIGSTPYFLQPQT DVVFGTSYGDKFNLTTVFEEEEVEEEDEEEHKVEEEVEKKVIEEVDTSEASRRVRIQNIFTLCGNQRELTAAVPPPSGFGVDCGKENNPKLFPIENIIPL PLTPGGSCLSKQQKQGGDAFSPELGRLSSTPFITQRKVLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14330			P-loop containing nucleoside t...		Lus10021167 [exp]	0	1
AT1G16630			unknown protein		Lus10006845 [exp]	2.4	0.9727
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	3.5	0.9702
AT5G25090		AtENODL13	early nodulin-like protein 13 ...		Lus10026880 [exp]	3.5	0.9624
AT4G14330			P-loop containing nucleoside t...		Lus10011804 [exp]	4.6	0.9655
AT5G06150		CYC1BAT, CYCB1;...	cyclin B 1;2, Cyclin family pr...		Lus10039033 [exp]	5.0	0.9642
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Lus10030746 [exp]	5.7	0.9585
AT5G25380		CYCA2;1	cyclin a2;1 (.1)		Lus10013140 [exp]	7.0	0.9615
					Lus10037590 [exp]	7.5	0.9651
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10007522 [exp]	8.8	0.9569
AT1G67820			Protein phosphatase 2C family ...		Lus10006222 [exp]	9.2	0.9550

Compare expression of checked genes

Lus10021167 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.