Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33460 79 / 1e-16 RIC1 ROP-interactive CRIB motif-containing protein 1 (.1) AT3G23380 74 / 2e-15 RIC5 ROP-interactive CRIB motif-containing protein 5 (.1) AT4G28556 73 / 8e-15 RIC7 PAK-box/P21-Rho-binding family protein (.1) AT1G04450 70 / 2e-13 RIC3 ROP-interactive CRIB motif-containing protein 3 (.1) AT2G20430 65 / 6e-12 RIC6 ROP-interactive CRIB motif-containing protein 6 (.1) AT4G04900 61 / 4e-11 RIC10 ROP-interactive CRIB motif-containing protein 10 (.1) AT1G61795 54 / 5e-09 PAK-box/P21-Rho-binding family protein (.1) AT1G03982 56 / 6e-09 PAK-box/P21-Rho-binding family protein (.1) AT4G21745 55 / 6e-09 PAK-box/P21-Rho-binding family protein (.1) AT1G27380 40 / 0.0005 RIC2 ROP-interactive CRIB motif-containing protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011805 [exp] 291 / 1e-97 AT2G33460 97 / 2e-24 ROP-interactive CRIB motif-containing protein 1 (.1) Lus10018362 [exp] 69 / 2e-13 AT4G04900 94 / 2e-24 ROP-interactive CRIB motif-containing protein 10 (.1) Lus10007648 [exp] 67 / 5e-13 AT4G04900 88 / 2e-22 ROP-interactive CRIB motif-containing protein 10 (.1) Lus10006763 [exp] 62 / 3e-11 AT4G04900 81 / 2e-19 ROP-interactive CRIB motif-containing protein 10 (.1) Lus10003625 [exp] 56 / 4e-09 AT4G28556 94 / 3e-24 PAK-box/P21-Rho-binding family protein (.1) Lus10008243 [exp] 54 / 3e-08 AT4G28556 94 / 3e-24 PAK-box/P21-Rho-binding family protein (.1) Lus10020060 [exp] 52 / 2e-07 AT3G54200 72 / 4e-15 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1) Lus10021974 [exp] 43 / 0.0001 AT2G33460 51 / 4e-08 ROP-interactive CRIB motif-containing protein 1 (.1) Lus10041267 [exp] 41 / 0.0007 AT2G33460 55 / 5e-09 ROP-interactive CRIB motif-containing protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069500 [exp] 116 / 2e-29 AT4G28556 99 / 1e-24 PAK-box/P21-Rho-binding family protein (.1) Potri.008G168900 [exp] 95 / 3e-22 AT2G33460 101 / 4e-26 ROP-interactive CRIB motif-containing protein 1 (.1) Potri.004G020650 [exp] 74 / 9e-16 AT4G04900 73 / 1e-16 ROP-interactive CRIB motif-containing protein 10 (.1) Potri.011G025300 [exp] 69 / 6e-14 AT4G04900 89 / 5e-23 ROP-interactive CRIB motif-containing protein 10 (.1) Potri.005G227500 [exp] 71 / 8e-14 AT4G28556 106 / 5e-28 PAK-box/P21-Rho-binding family protein (.1) Potri.002G035500 [exp] 70 / 3e-13 AT2G20430 105 / 1e-27 ROP-interactive CRIB motif-containing protein 6 (.1) Potri.002G233400 [exp] 42 / 0.0002 AT5G16490 89 / 1e-22 ROP-interactive CRIB motif-containing protein 4 (.1) Potri.014G147000 [exp] 41 / 0.0003 AT5G16490 76 / 8e-18 ROP-interactive CRIB motif-containing protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00786 [flax] [poplar] PBD P21-Rho-binding domain
Representative CDS sequence Show only first row Show all	>Lus10021168 pacid=23171406 polypeptide=Lus10021168 locus=Lus10021168.g ID=Lus10021168.BGIv1.0 annot-version=v1.0 ATGGGCCGGACGGTGCTGACGTTATCATGGGGCTTACGGGACTGGCTAGCCGTCGTTGGCGACGTCGCCGGAACCACCATCGGGAAAACCCTAGATCGCA GACAGGCCTCGAGAAATCGCCTCAAACTATACCTCCGAAAAAGTCGGGCTCATGAGAAAGAACAAGAAATCGAGATTGGGTTTCCTACCGATGTAAAACA TGTTGCACATATCGGATCCGATGGCCCTTCTTCCACCACCCCTAGTTGGATGCATGACTTCAAATCTACCCCAGAGACGACGATGAGTGGCCCTTTGAAT CCTACAGATGATCTCAAGAGCCTTCCTTCTCCAACAAAAGCACAATCTGAAGGTTCGTTCGTTCTATTTCGCCCGGTGGCTGCGGACGTTAGCATGGGGC TTACGGTACGGGCTAGCCGTCGTTGGCGACGTCGCCGGAACCACCATCGGGAAAACCCTAGATCGCAGACAGGCCTCGAGAAATCGCCTCAAACTATACC TCCGAAAAAGTCGGGCTCGTATTCATCCTTCTCTAGAGTATATCATGAGAAAGAACAAGAAATCGAGATTGGGTTTCCTACCGATGTAAAACATGTTGCA CATATCGGATCCGATGGCCCTTCTTCCACCACCCCTAGTTGGATGCATGACTTTAAATCTACCCCAGAGACGACGATGAGTGGCCCTTTGAATCCTACAG ATGATCTCAAGAGCCTTCCTTCTCCAACAAAAGCACAATCTGAAGCTGGTGGGTCCACCCACAGGAAGCACAGGTCAAGGCGCTCATCCAGTGACGCGCC AAAGCACACGAGGCGAGGATCGAATGCCAGCAGTGCAGCCGGTTCGCCGGTGGGTTCACCAAAAGCCGGCGACGGCGAGAAGAAGTCGAGGCGCCACCGG TCTTCCAACAACATGGCGATGGGATCCCCAGCCAGGGAGACGTCGACTGGAGGAAGCGTGAAAGCGAGGAAGAGCAAGAAATCATCTTCGTCGTCGGCCA ATCAGGGCGACGAATCCCCTCCCAGTGTTGACCAGCCATCCATTCCGAAGCATTCTCGCACTAGGAAATCGAGAGCCAGATCAAAGGAGCAGCCGGATAA TTCTGCTCCCATCGACGGGCTTCCTCCCACGGCCGATGGCGGCTCGACCAGGAGCACCAATGCCGGCCATCTAACTTCAGTTTTGGATGCTTACCAAGAG GAAAGGTGA
AA sequence Show only first row Show all	>Lus10021168 pacid=23171406 polypeptide=Lus10021168 locus=Lus10021168.g ID=Lus10021168.BGIv1.0 annot-version=v1.0 MGRTVLTLSWGLRDWLAVVGDVAGTTIGKTLDRRQASRNRLKLYLRKSRAHEKEQEIEIGFPTDVKHVAHIGSDGPSSTTPSWMHDFKSTPETTMSGPLN PTDDLKSLPSPTKAQSEGSFVLFRPVAADVSMGLTVRASRRWRRRRNHHRENPRSQTGLEKSPQTIPPKKSGSYSSFSRVYHEKEQEIEIGFPTDVKHVA HIGSDGPSSTTPSWMHDFKSTPETTMSGPLNPTDDLKSLPSPTKAQSEAGGSTHRKHRSRRSSSDAPKHTRRGSNASSAAGSPVGSPKAGDGEKKSRRHR SSNNMAMGSPARETSTGGSVKARKSKKSSSSSANQGDESPPSVDQPSIPKHSRTRKSRARSKEQPDNSAPIDGLPPTADGGSTRSTNAGHLTSVLDAYQE ER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33460		RIC1	ROP-interactive CRIB motif-con...		Lus10021168 [exp]	0	1
AT2G25430			epsin N-terminal homology (ENT...		Lus10019402 [exp]	4.9	0.8165
AT3G07940			Calcium-dependent ARF-type GTP...		Lus10016347 [exp]	13.7	0.7570
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10042106 [exp]	18.1	0.8087
AT4G35980			unknown protein		Lus10042598 [exp]	23.5	0.7561
AT1G06240			Protein of unknown function DU...		Lus10033620 [exp]	23.9	0.7987
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10014283 [exp]	27.0	0.7840
AT1G26850			S-adenosyl-L-methionine-depend...		Lus10042197 [exp]	27.9	0.7732
AT1G27180			disease resistance protein (TI...		Lus10008519 [exp]	30.0	0.7566
AT3G50120			Plant protein of unknown funct...		Lus10019324 [exp]	32.3	0.7588
AT1G17930			Aminotransferase-like, plant m...		Lus10000686 [exp]	33.4	0.7920

Compare expression of checked genes

Lus10021168 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.