Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33470 334 / 3e-118 ATGLTP1, GLTP1 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) AT1G21360 130 / 1e-37 GLTP2 glycolipid transfer protein 2 (.1) AT3G21260 121 / 8e-34 GLTP3 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011806 [exp] 404 / 3e-145 AT2G33470 324 / 4e-114 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10003626 [exp] 251 / 9e-85 AT2G33470 242 / 3e-81 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10008244 [exp] 229 / 3e-76 AT2G33470 216 / 1e-71 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Lus10018917 [exp] 130 / 2e-37 AT3G21260 229 / 3e-76 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) Lus10028618 [exp] 126 / 8e-36 AT1G21360 224 / 6e-74 glycolipid transfer protein 2 (.1) Lus10029765 [exp] 123 / 4e-35 AT3G21260 212 / 9e-70 GLYCOLIPID TRANSFER PROTEIN 3, Glycolipid transfer protein (GLTP) family protein (.1), Glycolipid transfer protein (GLTP) family protein (.2), Glycolipid transfer protein (GLTP) family protein (.3) Lus10042793 [exp] 119 / 4e-31 AT1G21370 486 / 2e-170 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G069600 [exp] 368 / 2e-131 AT2G33470 332 / 3e-117 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.008G168800 [exp] 330 / 1e-116 AT2G33470 315 / 1e-110 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.002G035600 [exp] 278 / 8e-96 AT2G33470 273 / 2e-94 ARABIDOPSIS GLYCOLIPID TRANSFER PROTEIN 1, glycolipid transfer protein 1 (.1.2) Potri.005G188600 [exp] 139 / 4e-41 AT1G21360 259 / 3e-88 glycolipid transfer protein 2 (.1) Potri.002G071100 [exp] 128 / 8e-37 AT1G21360 253 / 8e-86 glycolipid transfer protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08718 [flax] [poplar] GLTP Glycolipid transfer protein (GLTP)
Representative CDS sequence Show only first row Show all	>Lus10021169 pacid=23171372 polypeptide=Lus10021169 locus=Lus10021169.g ID=Lus10021169.BGIv1.0 annot-version=v1.0 ATGGGGGATGATGTTGATCGCGTATGCAGGGTTAGTGAGATGGCCGGAGAAGGAACTATTTTCGCTCCCTCACTGGAAGGGATGAAGCAAGTCAAATCGG ACCAAGGGGAAATGCTCACCAAGCCTTTCCTCGATGTCTGCAAATTGATCCTTCCCGTGATCGATAAGTTTGGAGCTGCTTTGGCCATTGTGAAATCTGA TATTGGCGGTAATATAACGAGATTGGAAACCAAATATTCTACTGATCCTCCAAAATACAAGCTCCTATACACTATGATTCAAGAGGAGGTTCAAGCAAAA ACAGCAAAAGGATCTTCTAGCTGTACCAATGGTCTGCTTTGGTTAACCAGAGCTATGGATTTCCTGGTGGAATTGTTCCGCAATTTACTGACACATCAAG ATTGGACAATGAGCCAAGCATGTACAGATTCATACTGCAAGACCCTGAAAAAGTTCCATGGCTGGCTTGCTAGTTCAAGTTTCACCGTTGCAATGAAGCT TGGTCCTGACAGAAAGAAGTTCATGGAAGTGGTTTCTGGGACAGGTGACATTAATGCTGACATCGAAAAGTTCTGTTCAACCTTTTCTCCGTTCCTTGCA GAGAATCACAAGTTCCTGGCTAGTGTTGGGATGGATGATCTGAAAGCTTCCTAG
AA sequence Show only first row Show all	>Lus10021169 pacid=23171372 polypeptide=Lus10021169 locus=Lus10021169.g ID=Lus10021169.BGIv1.0 annot-version=v1.0 MGDDVDRVCRVSEMAGEGTIFAPSLEGMKQVKSDQGEMLTKPFLDVCKLILPVIDKFGAALAIVKSDIGGNITRLETKYSTDPPKYKLLYTMIQEEVQAK TAKGSSSCTNGLLWLTRAMDFLVELFRNLLTHQDWTMSQACTDSYCKTLKKFHGWLASSSFTVAMKLGPDRKKFMEVVSGTGDINADIEKFCSTFSPFLA ENHKFLASVGMDDLKAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10021169 [exp]	0	1
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10038577 [exp]	1.7	0.8838
AT5G57140		ATPAP28, PAP28	purple acid phosphatase 28 (.1...		Lus10022947 [exp]	2.4	0.8492
AT3G21310			Core-2/I-branching beta-1,6-N-...		Lus10009738 [exp]	5.7	0.8481
AT1G21070			Nucleotide-sugar transporter f...		Lus10036606 [exp]	9.7	0.8292
AT3G30841			Cofactor-independent phosphogl...		Lus10034089 [exp]	14.4	0.8139
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Lus10037877 [exp]	15.2	0.8171
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10006585 [exp]	15.9	0.8252
AT3G10980		SAG20, WI12, AT...	PLAC8 family protein (.1)		Lus10017417 [exp]	18.6	0.7997
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10033950 [exp]	20.4	0.8298
AT2G18030			Peptide methionine sulfoxide r...		Lus10028467 [exp]	25.0	0.7897

Compare expression of checked genes

Lus10021169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.