Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20450 218 / 1e-74 Ribosomal protein L14 (.1) AT4G27090 216 / 7e-74 Ribosomal protein L14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011807 [exp] 261 / 1e-91 AT2G20450 221 / 9e-76 Ribosomal protein L14 (.1) Lus10024918 [exp] 251 / 8e-88 AT2G20450 224 / 3e-77 Ribosomal protein L14 (.1) Lus10008246 [exp] 250 / 2e-87 AT2G20450 228 / 8e-79 Ribosomal protein L14 (.1) Lus10003627 [exp] 154 / 6e-50 AT4G27090 139 / 2e-44 Ribosomal protein L14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G168600 [exp] 232 / 3e-80 AT4G27090 230 / 2e-79 Ribosomal protein L14 (.1) Potri.002G035700 [exp] 229 / 5e-79 AT4G27090 234 / 8e-81 Ribosomal protein L14 (.1) Potri.005G227300 [exp] 228 / 9e-79 AT4G27090 235 / 3e-81 Ribosomal protein L14 (.1) Potri.010G069900 [exp] 226 / 7e-78 AT4G27090 228 / 2e-78 Ribosomal protein L14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [flax] [poplar] KOW PF01929 [flax] [poplar] Ribosomal_L14e Ribosomal protein L14
Representative CDS sequence Show only first row Show all	>Lus10021170 pacid=23171383 polypeptide=Lus10021170 locus=Lus10021170.g ID=Lus10021170.BGIv1.0 annot-version=v1.0 ATGGGTTTCAAAAGATACGTCGAGATCGGACGGGTTGCTCTGATCAACTACGGGAAGGACTATGGAAAGCTCGTTGTCATTGTCGATGTCGTCGACCAAA ATCGGGCTCTAGTTGATTCACCTGATATGGTTAGGAGCCAAATCAATTTCAAGAGGCTTACTCTCACTGACATCAAGATTGAGATTAACAGAGTTCCCAG GAAGAAGACTCTTATCGAAGCCATGGAGAAGGCTGATGTTAAAGGAAAGTGGGAGAACAGCTCTTGGGGCTGCAAGTTGATCGTTAAGCAGAGGAGGGCA GCTCTCACCGACTTTGACAGGTTCAAGGTTATGTTGGCAAAGATCAAGAGAGGAGGATTGATCAAGCAAGAGCTTGCCAAGCTGAAGAAGACCGCCGCTT AG
AA sequence Show only first row Show all	>Lus10021170 pacid=23171383 polypeptide=Lus10021170 locus=Lus10021170.g ID=Lus10021170.BGIv1.0 annot-version=v1.0 MGFKRYVEIGRVALINYGKDYGKLVVIVDVVDQNRALVDSPDMVRSQINFKRLTLTDIKIEINRVPRKKTLIEAMEKADVKGKWENSSWGCKLIVKQRRA ALTDFDRFKVMLAKIKRGGLIKQELAKLKKTAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20450			Ribosomal protein L14 (.1)		Lus10021170 [exp]	0	1
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10014035 [exp]	1.0	0.9695
AT3G25520		PGY3, ATL5, OLI...	RIBOSOMAL PROTEIN L5 A, PIGGYB...		Lus10004874 [exp]	1.4	0.9686
AT1G41880			Ribosomal protein L35Ae family...		Lus10028254 [exp]	1.7	0.9678
AT5G02610			Ribosomal L29 family protein ...		Lus10023449 [exp]	2.0	0.9652
AT4G39200			Ribosomal protein S25 family p...		Lus10021706 [exp]	5.5	0.9507
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10027260 [exp]	6.9	0.9550
AT4G14320			Zinc-binding ribosomal protein...		Lus10010195 [exp]	7.0	0.9536
AT5G02610			Ribosomal L29 family protein ...		Lus10019179 [exp]	8.5	0.9514
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Lus10000421 [exp]	8.7	0.9398
AT2G34480			Ribosomal protein L18ae/LX fam...		Lus10023454 [exp]	8.9	0.9587

Compare expression of checked genes

Lus10021170 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.