Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23360 219 / 4e-71 Protein phosphatase 2C family protein (.1) AT2G20630 120 / 3e-32 PIA1 PP2C induced by AVRRPM1 (.1.2) AT3G15260 120 / 4e-32 Protein phosphatase 2C family protein (.1.2) AT4G28400 114 / 3e-30 Protein phosphatase 2C family protein (.1) AT1G22280 98 / 5e-24 PAPP2C phytochrome-associated protein phosphatase type 2C (.1.2.3) AT1G34750 97 / 1e-23 Protein phosphatase 2C family protein (.1) AT5G24940 98 / 6e-23 Protein phosphatase 2C family protein (.1) AT4G31750 95 / 2e-22 WIN2 HOPW1-1-interacting 2 (.1) AT1G78200 94 / 3e-22 Protein phosphatase 2C family protein (.1.2) AT2G34740 92 / 2e-21 Protein phosphatase 2C family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011808 [exp] 537 / 0 AT3G23360 227 / 6e-74 Protein phosphatase 2C family protein (.1) Lus10018618 [exp] 112 / 3e-29 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10039853 [exp] 112 / 4e-29 AT4G28400 427 / 2e-152 Protein phosphatase 2C family protein (.1) Lus10008556 [exp] 112 / 5e-29 AT4G28400 352 / 1e-122 Protein phosphatase 2C family protein (.1) Lus10020924 [exp] 110 / 1e-28 AT1G34750 438 / 7e-157 Protein phosphatase 2C family protein (.1) Lus10028094 [exp] 108 / 2e-27 AT4G28400 360 / 8e-126 Protein phosphatase 2C family protein (.1) Lus10040565 [exp] 105 / 1e-26 AT4G28400 359 / 1e-125 Protein phosphatase 2C family protein (.1) Lus10033453 [exp] 101 / 4e-25 AT1G34750 369 / 7e-130 Protein phosphatase 2C family protein (.1) Lus10038455 [exp] 92 / 7e-22 AT2G34740 327 / 1e-112 Protein phosphatase 2C family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G168400 [exp] 320 / 4e-110 AT3G23360 242 / 9e-80 Protein phosphatase 2C family protein (.1) Potri.010G070100 [exp] 316 / 8e-109 AT3G23360 224 / 7e-73 Protein phosphatase 2C family protein (.1) Potri.017G013300 [exp] 124 / 1e-33 AT4G28400 439 / 2e-157 Protein phosphatase 2C family protein (.1) Potri.001G398100 [exp] 123 / 2e-33 AT3G15260 469 / 7e-169 Protein phosphatase 2C family protein (.1.2) Potri.011G116700 [exp] 123 / 2e-33 AT3G15260 439 / 5e-157 Protein phosphatase 2C family protein (.1.2) Potri.018G150800 [exp] 109 / 4e-28 AT4G28400 340 / 1e-117 Protein phosphatase 2C family protein (.1) Potri.005G164600 [exp] 109 / 5e-28 AT1G34750 450 / 1e-161 Protein phosphatase 2C family protein (.1) Potri.002G097200 [exp] 106 / 6e-27 AT1G34750 449 / 2e-161 Protein phosphatase 2C family protein (.1) Potri.006G081400 [exp] 102 / 2e-25 AT4G28400 348 / 3e-121 Protein phosphatase 2C family protein (.1) Potri.006G267600 [exp] 94 / 4e-22 AT4G31750 535 / 0.0 HOPW1-1-interacting 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [flax] [poplar] PP2C PF00481 [flax] [poplar] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Lus10021171 pacid=23171377 polypeptide=Lus10021171 locus=Lus10021171.g ID=Lus10021171.BGIv1.0 annot-version=v1.0 ATGGGGCTGAAGGATCTCCATCTCAAGCTAAAGGGATTCAGGCTCAGGTGGTTGCTCGTAAGGAAAGGGAAGGAAAGAAGGGAGATTGGGTCTCGGAAGA AGCCTTCATGGCTAAGACCAGTCTCCCATGGCTATCATGTTATTGAAGACCAGCCTTTCAGAAACACAATGGAAGCTTCTCATGCTCCTCCTGCTGTTTC TGACTGTGATTCTGTGGTTTTCCAGAGAGAGCGTGTAGAAGAGATCGACTTGTGGTACTTTGGACTCTCTGATTCTCAAACCGGAGACCTGATCACTAAG CATTTGCAATCCCATCTCTTTGATAGGCACAGAAAAGAGTCTCAGGTGAGGTGGAAGAGTAAAGAGATACTGAGAAAAGCATATCTTAGTGCAAGAGCCA AAATCAGAGAGGGGCTCAACAAGTCAGACGAGGTTCTGAGAATTGGTTCAGCATCAGCCATGGTGATCAATGCAGAAAAGCTTCTTGTTGCCAGTATGGG GAACTATAGAGCTGTAGTTTGTAGAGATGGGGTGGCTTATGACTCCAGCGATAAGCATGGAACGAATTGGGCTCGTCGGCTTTTCTCAGGATGGAAGAGT GCATCCGGTCACAAGCAAGCTAAGGGCTCCAAATTCCTAATCAGAGTCGAAAAGATTGACTCCAATACTGAGTTTGTAATCATAGCAAGCAATGGCATTT GGGAGGTGATGAAGAAACAGGAAGCAGCGAGTCTGATTAGGCATATGGAGAATCCCCAAGAAGCTGCTGAATGTTTAACAATGGAGGCCTTGACTAGGAT GAGCAGAGGCAACATTTCTTGCATAGTCATTCGCTTTGACTAG
AA sequence Show only first row Show all	>Lus10021171 pacid=23171377 polypeptide=Lus10021171 locus=Lus10021171.g ID=Lus10021171.BGIv1.0 annot-version=v1.0 MGLKDLHLKLKGFRLRWLLVRKGKERREIGSRKKPSWLRPVSHGYHVIEDQPFRNTMEASHAPPAVSDCDSVVFQRERVEEIDLWYFGLSDSQTGDLITK HLQSHLFDRHRKESQVRWKSKEILRKAYLSARAKIREGLNKSDEVLRIGSASAMVINAEKLLVASMGNYRAVVCRDGVAYDSSDKHGTNWARRLFSGWKS ASGHKQAKGSKFLIRVEKIDSNTEFVIIASNGIWEVMKKQEAASLIRHMENPQEAAECLTMEALTRMSRGNISCIVIRFD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23360			Protein phosphatase 2C family ...		Lus10021171 [exp]	0	1
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10037992 [exp]	3.2	0.8872
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Lus10009225 [exp]	9.5	0.8674
AT5G42510			Disease resistance-responsive ...		Lus10038298 [exp]	10.8	0.8379
AT2G43210			Ubiquitin-like superfamily pro...		Lus10026717 [exp]	13.7	0.8727
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Lus10009377 [exp]	13.8	0.8453
AT3G08840			D-alanine--D-alanine ligase fa...		Lus10012211 [exp]	14.3	0.8721
AT3G09870			SAUR-like auxin-responsive pro...		Lus10023011 [exp]	16.9	0.8605
AT3G05010			Protein of unknown function, t...		Lus10018985 [exp]	27.5	0.8563
AT2G44180		MAP2A	methionine aminopeptidase 2A (...		Lus10000403 [exp]	28.2	0.8688
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Lus10027186 [exp]	29.3	0.8725

Compare expression of checked genes

Lus10021171 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.