Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43310 800 / 0 COP1-interacting protein-related (.1.2.3.4) AT4G27430 246 / 8e-67 CIP7 COP1-interacting protein 7 (.1.2) AT1G61100 232 / 2e-63 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) AT3G14172 143 / 4e-34 unknown protein AT1G72410 120 / 2e-27 COP1-interacting protein-related (.1.2) AT1G17360 113 / 5e-25 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011809 [exp] 2173 / 0 AT5G43310 839 / 0.0 COP1-interacting protein-related (.1.2.3.4) Lus10043092 [exp] 224 / 1e-59 AT4G27430 540 / 2e-175 COP1-interacting protein 7 (.1.2) Lus10032660 [exp] 219 / 6e-58 AT4G21760 525 / 6e-175 beta-glucosidase 47 (.1) Lus10018471 [exp] 214 / 1e-57 AT1G61100 474 / 1e-155 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10011217 [exp] 212 / 1e-56 AT1G61100 475 / 5e-156 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Lus10013178 [exp] 143 / 5e-34 AT3G28860 889 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) Lus10008140 [exp] 141 / 2e-33 AT1G72410 585 / 0.0 COP1-interacting protein-related (.1.2) Lus10000225 [exp] 109 / 2e-25 AT4G21760 189 / 1e-55 beta-glucosidase 47 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G168300 [exp] 1151 / 0 AT5G43310 891 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.010G070200 [exp] 1134 / 0 AT5G43310 892 / 0.0 COP1-interacting protein-related (.1.2.3.4) Potri.011G046900 [exp] 248 / 3e-68 AT1G61100 484 / 6e-158 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.004G038300 [exp] 240 / 2e-65 AT1G61100 462 / 1e-149 disease resistance protein (TIR class), putative (.1), disease resistance protein (TIR class), putative (.2) Potri.001G403700 [exp] 228 / 6e-61 AT4G27430 366 / 6e-109 COP1-interacting protein 7 (.1.2) Potri.011G122900 [exp] 213 / 7e-56 AT4G27430 649 / 0.0 COP1-interacting protein 7 (.1.2) Potri.001G164900 [exp] 141 / 2e-33 AT3G14172 521 / 1e-161 unknown protein Potri.003G070400 [exp] 139 / 4e-33 AT3G14172 544 / 3e-170 unknown protein Potri.019G064000 [exp] 77 / 5e-14 AT3G14172 99 / 8e-21 unknown protein Potri.013G091900 [exp] 75 / 3e-13 AT3G14172 122 / 7e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021172 pacid=23171414 polypeptide=Lus10021172 locus=Lus10021172.g ID=Lus10021172.BGIv1.0 annot-version=v1.0 ATGAGGTCTTCAACTAGACTTCACTCTGCTGTTTTTCAGCTTACACCTACTCGAACCAGGTGTGACTTGGTTATAAATGCCAATGGGAAGACGGAAAAGA TAGCTACTGGGCTAGTGACCCCATTTCTTGCACATTTGAAGGCTGCCCAAGAACAAATGGACAAGGGTGGTTACTCTATAAGTCTTGTGCCCGAGAATGG AAGTGATGTTACATGGTTTACAAAGGAAACTATTGAAAGGTTTGTACGATTTGTGAGCACCCCGGAGATATTGGAACGTGTTTATACTTTAGAATCAGAG ATTCTACAGATGGAAGAGGCAATTGCTACACAAAGCAGCAGTGACCTTGGCAATAGCATGGTTGAAGATCACCACCCAAAACCTTTGGAACGAAATGAAG GAAGCAAGCCTTTACTGGATTCCAGTGAAGAGAAAGCCATTGTACTTTATCAACCTGATGCACATCCACCTGAAGCAAATGAGACGCCAGCAGAGTCAAG ACTCCAACTTAAGAAAGTTCTGGAGACACGTAGAACTGTGTTACAGAAAGAGCAAGGAATGGCATTTGCCCGTGCAGTAGCAGCAGGTTTTGATGTTGAT CAAATGGCGCCTTTGATGTCCTTTGCTGAAAGCTTTGGAGCTTCTCGAATGAGGCAAGCATACATACTGGATGCATGCTTGAAATTCAAGGATCTGTGGA AAAGGAAGCATGAAAGTGGCCAATGGGTCGAAATTGAAGCAGCTGAAGCAATGAATAGCCAGGAAGAATTCTCCTTGGTTAATTCATCAGGCATTATTCT TGCAAATGGAGCCAGCAAGCAGTGGCCTGAAAGTTCTGACAACAATGGGAAATCACATGGTTCAGATGAAAATCCTGCCATGGATCAGTCACCAGTGCAA GCTCACCAAGGATACTTCCAGGGCCAGATGCCACATCCAATGTTCTCTCCTTGGCCTATCAACTCTCCTCCCGGTACGTTGCCTGTTGTTCAGGGAATTC CCATGCATGGCATCCCTTATTACCAGAACTATCCCGGGACCCCTTTTGTTCAGCAACCATATCCACCAGGTGAAGATAACAGAGTGAATAGTGGTCAGCG AGTGAGACGTAGGCGACATTCCATGGATTGCGAGGATACTGAAGCTTGGGATGTTGATGCTACCAGGACTAGATCCCAAGATGATGCAGAATTGGACAAT GACACTTCTGGAAAAGGCGGTAGATCCTCTGGTAGAAAAAAGAAGTCTGGAAAGGTTGTCATACGTAACATTAACTACATCACTTCCAATCAGGACGTCT CAGAAAACGAATCCCAATCTGCTTCCGGTTCTGATGACGAAGAGCAAGATGGATATTCCCCAGCCAGGAATAATTCAAGCATCATACAGAAGAAATCTGC TAGATCTTCTAAAAGAGAAGACAGTCATCTAAATACAACTACTAATAAGGAAGGAGATGATGGACACTGGCAAGCATTTCAAAACTATTTGCTGAAAGAT GCTGATGAAGCTGAACATGACAACGGGGGAGATATGTTTGCAATGGAAAGGGGAACACGTACAAAACGGCGACAAAATGCTGTCAGAGGAGATGATCCCT TATCCGTTGGTGGACGAGATGGTTACAGTCAAGATGGTGAGATGGCAGACGTACAGAGAATCAGTGGCAGCTTGACCCGGGTGGGTAGAGGATCAACTGA TGATTTCATAGTTAATGGGCATAGAAATCACTCTGGGTATGATGCGGATTCCCTTGCTTTGAACAAATACGAGAACGGAAATACTGATTTGGATAGGAAG TCACCACAGTACATGGATGATGGCTCTCGCATAGTTCCATTAAGGTCACCTTTGCAATATGAAGGTGAAACACATGGAAACAATACTATTAATATGGATT ATGAATTGTCATCAGCTATGCCAGAAGTGACTGGGGCCATTATCAAATATGAGCCAGATGATTTAACTTTGATGCCTGAACGTGAGATGGAAAGAGGGAC TGTTGGTTATGATCCTGCTTTAGATTATGATATGGAAGCTCATATTTCTGCTAATGGTATTAAGAAAGGTAAAAAGGTAGAGAATGATCCGAAGCCGGGC CCGAGATCGAAACGTACCCCGAATTCGTTAGACAAGAAAAAGACAGTGGGGCCAATCAGAAAGGGAAAACCTTCAAAGTTGAGTCCATTAGATGAAGCAA AGGCACGAGCTGAAAAGCTAAGAAGCTTCAAAGCCGATCTCCAGAAAATGAAGAAGGCGAGGGAAGAAGAAGAAATGAAACGACTTGCTTCTTTGAAGCA ACAAAGGCAAAAGAGAATTTCCTCAAGGGGGAGTTCGATTCCTGCTCCGTCAACCCCACTGCAAACCAGGAAATCATTGCCTACGAAACTTTCACCAATT TCTCACAAGGGGTCTAAATTTAGCGATTCAGAGCCTGGACCATCATCTCCTCTACAAAGATCATCCATAAAAGTTGTTCCTGCAAGAACCGGTCCTTCTG TCAAAGCCTCCAAGTCAAGCAAGTTGAGTACTGGAAGCTCATCATCTGCTGGAAATAGATTGACTAGATCAGTGTCATCATTGTCCGGGTCGAAGGTGGA GGATGGTCCTGTAACCACTGATACAAAGGCATCCATGGCACGTATCAGAAGATTATCAGAGCCTAAAGTAATAAGCGGCAGCAACCTTCGTGTCGCTACA ACGAAGCCACAGAAAGTTGAACAGACACCATCTTCAGTCAAAGCAAAGAGTACTCAGCCAGCATTGAAACGAAAACTATCAAATGGGCCTGAAACAAAGA AGATATCAGCAATTGTAAACTATGATAAAAGCAAAGCTGCATCGCTTCCAGAGCTGAAAACAAGAACCCCAAAAGCATCTGATGTCGAAAATAGATCCAA GCCTCTGGTGACTTCTGAAAGTCCTGAATTGGAAAAGATTGTTGTAATACCTGAATGTGAGACGTCTTCTGTTCCCACATCACGCGCCTTAGAAGAAAGT ATCAGTGTGCAAGATTCGAACCCCGCTCTGCATAACACAGTAATGAAGCCTGATATTGTAGCAGAAGAACCTAGAATGGTTAAGGCTGCAACGGTGGCAG CAAATGAGTTACCGAAGGTTTCGAGCAGCAGTGTTGATGAAAAACCATACCAGGCTCCATTTGCCAGGAACTCATCTCTCGAAGATCCATGCACTAGGAA CTCAGAGTATGGGAAAGCACCTCCGACGAATGTACTGCCAACAACAGCAACGATTGGTACCGACACAATGAAAGTTCGTGTGTCTGATTCTACAAGCCTG AAATTAGAGAAGATCCCTGAAGTTGTTGACAAGTCTGAAACGAAAGAATCGTCAAAGGGGTTTAGACGGCTGCTAAAGTTTGGAAGGAAAAGTCATCCTA CAAATGACCGCAACTCTGAAGTGGATACTATGAGCGTCAAGAGTTTTGAGGCAAATGAAGGTGTTGCAAACACTACCACCTCTAACGAAGCTTTTACTCT GAAGAATCTCATCTCTGAAGATGAAACCCCTACTGCTGCAACTACACCTCAGAAATGTAAGCTTTATCTGACTCATCAGTCATTGGGTGATCAGATGTTC TCCATATCTATCCCACTGAAATCATATTTCGTTGCAGCTTCTCGACATTTCTCGCTGTTGTCACCCTTCCGGAGCAAGACTAGTGAAAAGAAGTTAACAG CTTGA
AA sequence Show only first row Show all	>Lus10021172 pacid=23171414 polypeptide=Lus10021172 locus=Lus10021172.g ID=Lus10021172.BGIv1.0 annot-version=v1.0 MRSSTRLHSAVFQLTPTRTRCDLVINANGKTEKIATGLVTPFLAHLKAAQEQMDKGGYSISLVPENGSDVTWFTKETIERFVRFVSTPEILERVYTLESE ILQMEEAIATQSSSDLGNSMVEDHHPKPLERNEGSKPLLDSSEEKAIVLYQPDAHPPEANETPAESRLQLKKVLETRRTVLQKEQGMAFARAVAAGFDVD QMAPLMSFAESFGASRMRQAYILDACLKFKDLWKRKHESGQWVEIEAAEAMNSQEEFSLVNSSGIILANGASKQWPESSDNNGKSHGSDENPAMDQSPVQ AHQGYFQGQMPHPMFSPWPINSPPGTLPVVQGIPMHGIPYYQNYPGTPFVQQPYPPGEDNRVNSGQRVRRRRHSMDCEDTEAWDVDATRTRSQDDAELDN DTSGKGGRSSGRKKKSGKVVIRNINYITSNQDVSENESQSASGSDDEEQDGYSPARNNSSIIQKKSARSSKREDSHLNTTTNKEGDDGHWQAFQNYLLKD ADEAEHDNGGDMFAMERGTRTKRRQNAVRGDDPLSVGGRDGYSQDGEMADVQRISGSLTRVGRGSTDDFIVNGHRNHSGYDADSLALNKYENGNTDLDRK SPQYMDDGSRIVPLRSPLQYEGETHGNNTINMDYELSSAMPEVTGAIIKYEPDDLTLMPEREMERGTVGYDPALDYDMEAHISANGIKKGKKVENDPKPG PRSKRTPNSLDKKKTVGPIRKGKPSKLSPLDEAKARAEKLRSFKADLQKMKKAREEEEMKRLASLKQQRQKRISSRGSSIPAPSTPLQTRKSLPTKLSPI SHKGSKFSDSEPGPSSPLQRSSIKVVPARTGPSVKASKSSKLSTGSSSSAGNRLTRSVSSLSGSKVEDGPVTTDTKASMARIRRLSEPKVISGSNLRVAT TKPQKVEQTPSSVKAKSTQPALKRKLSNGPETKKISAIVNYDKSKAASLPELKTRTPKASDVENRSKPLVTSESPELEKIVVIPECETSSVPTSRALEES ISVQDSNPALHNTVMKPDIVAEEPRMVKAATVAANELPKVSSSSVDEKPYQAPFARNSSLEDPCTRNSEYGKAPPTNVLPTTATIGTDTMKVRVSDSTSL KLEKIPEVVDKSETKESSKGFRRLLKFGRKSHPTNDRNSEVDTMSVKSFEANEGVANTTTSNEAFTLKNLISEDETPTAATTPQKCKLYLTHQSLGDQMF SISIPLKSYFVAASRHFSLLSPFRSKTSEKKLTA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43310			COP1-interacting protein-relat...		Lus10021172 [exp]	0	1
AT4G24270		EMB140	EMBRYO DEFECTIVE 140 (.1.2)		Lus10005168 [exp]	2.4	0.9333
AT5G43310			COP1-interacting protein-relat...		Lus10011809 [exp]	6.0	0.9151
AT5G18230			transcription regulator NOT2/N...		Lus10020262 [exp]	6.6	0.9124
AT5G61990			Pentatricopeptide repeat (PPR)...		Lus10036020 [exp]	7.2	0.9254
AT1G15750		TPL, WSIP1	WUS-INTERACTING PROTEIN 1, TOP...		Lus10011481 [exp]	9.2	0.9102
AT1G50710			unknown protein		Lus10043109 [exp]	9.3	0.8884
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Lus10039199 [exp]	10.1	0.9202
AT5G41580			RING/U-box superfamily protein...		Lus10032307 [exp]	10.1	0.8922
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10013744 [exp]	11.0	0.9245
AT1G13110		CYP71B7	"cytochrome P450, family 71 su...		Lus10028113 [exp]	11.5	0.9227

Compare expression of checked genes

Lus10021172 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.