Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23350 190 / 6e-58 ENTH/VHS family protein (.1) AT3G46540 170 / 8e-50 ENTH/VHS family protein (.1) AT1G08670 114 / 2e-29 ENTH/VHS family protein (.1) AT2G43160 86 / 5e-18 ENTH/VHS family protein (.1.2.3.4) AT5G11710 81 / 2e-16 ENTH/VHS family protein (.1) AT3G59290 80 / 7e-16 ENTH/VHS family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011810 [exp] 555 / 0 AT3G23350 196 / 3e-60 ENTH/VHS family protein (.1) Lus10040824 [exp] 189 / 7e-57 AT3G46540 277 / 1e-92 ENTH/VHS family protein (.1) Lus10016556 [exp] 186 / 7e-56 AT3G46540 266 / 3e-88 ENTH/VHS family protein (.1) Lus10040297 [exp] 156 / 4e-45 AT3G46540 191 / 9e-60 ENTH/VHS family protein (.1) Lus10005164 [exp] 137 / 2e-35 AT2G39630 387 / 2e-131 Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10023415 [exp] 102 / 2e-25 AT3G46540 123 / 3e-34 ENTH/VHS family protein (.1) Lus10025527 [exp] 92 / 7e-20 AT2G43160 716 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10026741 [exp] 90 / 3e-19 AT2G43160 705 / 0.0 ENTH/VHS family protein (.1.2.3.4) Lus10007460 [exp] 79 / 1e-15 AT5G11710 538 / 0.0 ENTH/VHS family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G239200 [exp] 187 / 2e-56 AT3G46540 263 / 8e-87 ENTH/VHS family protein (.1) Potri.009G030500 [exp] 185 / 2e-55 AT3G46540 270 / 2e-89 ENTH/VHS family protein (.1) Potri.008G055600 [exp] 157 / 2e-45 AT3G46540 182 / 6e-56 ENTH/VHS family protein (.1) Potri.010G204100 [exp] 98 / 2e-23 AT1G08670 113 / 1e-30 ENTH/VHS family protein (.1) Potri.002G231100 [exp] 89 / 6e-19 AT2G43160 317 / 1e-96 ENTH/VHS family protein (.1.2.3.4) Potri.014G151300 [exp] 87 / 3e-18 AT2G43160 644 / 0.0 ENTH/VHS family protein (.1.2.3.4) Potri.006G234100 [exp] 74 / 3e-14 AT5G11710 479 / 2e-164 ENTH/VHS family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [flax] [poplar] ENTH_VHS PF01417 [flax] [poplar] ENTH ENTH domain
Representative CDS sequence Show only first row Show all	>Lus10021173 pacid=23171397 polypeptide=Lus10021173 locus=Lus10021173.g ID=Lus10021173.BGIv1.0 annot-version=v1.0 ATGGGAACCCTTTTCTTAAACCAGATGAAGAAGCAAGCTCGCTCTTTTCTTCAAGACAAGTACAAAACTGCGAGGCTGGCTCTCACCGACGTTGCCCCTA TTGAATTGTTGACTGAGGAAGCAACAAACAATGAGCCATGGGGACCAGATGCTAAAACTATGACTAAAATTGCCGTGGCTTCCTTTGGCGTCGATGCTTA TTGTAGAATCGTCGAAATTATTCACAAAAGGTTGGATACGGTTGATTGGAAGCAATGGAGGCAGTCCTACAAAACGTTGGTACTTTTGGAATTCCTAATG ACGCATGGTCCTGAGGAACTCGCCGACGAATTCCACAACGACATCGATATCATTGAAGAGCTTGGCACTTTCCAATTCATTGACGACAAAGGATTGAACT GGGGAATGAACATGCAAAAGAGAGCCGACAACATCCTGGGCCTCCTACGCGGCGGGGAGGCGGCTCTGAAAGAAGCACGCATCAAAGCTTTGAGGATATC TAAAGAGATCCAAGGCTTCGGTAGCTCAACTCCTTCTTCCGCCGCAGCCGCTAATTCCTCCTCTCCCACCACCAGTACTACTACTCCATCCTCCGCCGTC TCCGACTGCTCCTTCGCCACCCCAAGGTCCACCTTCGAAGACATCTGCCGCCTCGAAAACATCTCCCTCGCCGACGAATTAGACCAATACGACGCTCATG AATCATCACTAGGAGCCGACCAATGTATTACTTACAACAATAATAATAATAATGATAATCAGGTGAGGCTGAGGTGGACCAAGAGTGTTGATCAATCAGC TGGGACGACTACCCACCGCTGGGATGGCCATGATCCAGTTCAAGAAAAGGGTTCCCTTTTGGATGACGATGATGATGATCAGGCCAAAGATCGGAAGCCG TCGTCGGATAATAATTATCAAGGGCTCGTTGGCGGTTTTTGCGCCAAGATTATGATGACCACTGCTACTGCTGCTGCTGCTGCTACTACTACTACTTCCC CAAAGAAGGATTACGGTGACGATAATAATAATAACAATAATTATAATGACGATAATAATAACGGTACCACTACTGGATTCAGGAGCTTTTCTGATGTTGG CAAGTTCTTGAAGAAGAGATATGATCGCCAGTTTTCTATAGGCTATTGA
AA sequence Show only first row Show all	>Lus10021173 pacid=23171397 polypeptide=Lus10021173 locus=Lus10021173.g ID=Lus10021173.BGIv1.0 annot-version=v1.0 MGTLFLNQMKKQARSFLQDKYKTARLALTDVAPIELLTEEATNNEPWGPDAKTMTKIAVASFGVDAYCRIVEIIHKRLDTVDWKQWRQSYKTLVLLEFLM THGPEELADEFHNDIDIIEELGTFQFIDDKGLNWGMNMQKRADNILGLLRGGEAALKEARIKALRISKEIQGFGSSTPSSAAAANSSSPTTSTTTPSSAV SDCSFATPRSTFEDICRLENISLADELDQYDAHESSLGADQCITYNNNNNNDNQVRLRWTKSVDQSAGTTTHRWDGHDPVQEKGSLLDDDDDDQAKDRKP SSDNNYQGLVGGFCAKIMMTTATAAAAATTTTSPKKDYGDDNNNNNNYNDDNNNGTTTGFRSFSDVGKFLKKRYDRQFSIGY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23350			ENTH/VHS family protein (.1)		Lus10021173 [exp]	0	1
					Lus10000984 [exp]	2.2	1.0000
AT1G20330		FRL1, CVP1, SMT...	FRILL1, COTYLEDON VASCULAR PAT...		Lus10004158 [exp]	3.2	1.0000
AT3G05550			Hypoxia-responsive family prot...		Lus10031490 [exp]	3.9	1.0000
					Lus10017835 [exp]	4.5	1.0000
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10042336 [exp]	4.9	0.9786
					Lus10040014 [exp]	5.0	1.0000
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026179 [exp]	5.8	0.9111
AT1G06770		DRIP1	DREB2A-interacting protein 1 (...		Lus10042532 [exp]	6.0	1.0000
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10005439 [exp]	6.9	1.0000
AT5G44400			FAD-binding Berberine family p...		Lus10027162 [exp]	7.0	1.0000

Compare expression of checked genes

Lus10021173 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.