Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28900 785 / 0 Calcium-binding EF-hand family protein (.1) AT5G28850 785 / 0 Calcium-binding EF-hand family protein (.1.2) AT1G54450 781 / 0 Calcium-binding EF-hand family protein (.1) AT5G44090 770 / 0 Calcium-binding EF-hand family protein (.1) AT1G03960 716 / 0 Calcium-binding EF hand family protein (.1.2) AT5G18580 89 / 2e-18 FASS2, TON2, GDO, FS1, EMB40, FASS GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011811 [exp] 1058 / 0 AT5G28850 797 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10029614 [exp] 950 / 0 AT5G28850 792 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10027963 [exp] 943 / 0 AT5G28850 771 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10032772 [exp] 934 / 0 AT5G28850 778 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10008193 [exp] 931 / 0 AT5G28850 768 / 0.0 Calcium-binding EF-hand family protein (.1.2) Lus10003628 [exp] 758 / 0 AT5G44090 775 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10008247 [exp] 739 / 0 AT5G44090 774 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10024917 [exp] 703 / 0 AT5G44090 751 / 0.0 Calcium-binding EF-hand family protein (.1) Lus10022907 [exp] 703 / 0 AT5G44090 737 / 0.0 Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019500 [exp] 842 / 0 AT5G28850 885 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.013G047300 [exp] 838 / 0 AT5G28850 887 / 0.0 Calcium-binding EF-hand family protein (.1.2) Potri.002G035800 [exp] 794 / 0 AT5G44090 814 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.005G227100 [exp] 758 / 0 AT5G44090 772 / 0.0 Calcium-binding EF-hand family protein (.1) Potri.010G022300 [exp] 89 / 2e-18 AT5G18580 835 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1) Potri.008G215300 [exp] 84 / 7e-17 AT5G18580 830 / 0.0 GORDO, FASS 1, EMBRYO DEFECTIVE 40, tonneau 2 (TON2) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021174 pacid=23171407 polypeptide=Lus10021174 locus=Lus10021174.g ID=Lus10021174.BGIv1.0 annot-version=v1.0 ATGGATATGGAAGGGGTGGTTTCAATGACTGACGTGGCGGCTTTCGACCCGGACATCCTCCAGTTACCGGAATTATCACCTTTGGCCTTGAAAGCCAACT CTTCCCTCGCCGACCAACTTTTCTCCCAGTGGCTTTCCCTTCCTCATACTTCTCGATTGGCCAAATCTTTGCTTTCTGTGGCTAAGACTGGAGGTCCCCT GAACGCTGTTGGCAACTCCAGTAGTCCAAATGCTGGTTCCGGCGGTTCAATACCGTCCATGTTTCCTTCTGCCAGCACTCCACCGCTTTCCCCTCGTAGC GTCTCAGGTTCACCTCGTACTGTGAAACAGAGAGCTGGTCTTTCCTCTTTAGGTTCTCCTCTTAAATTAATCAAAGACCCCGTGCGAGAAGTCATACCTC AGTTCTACTTCAAAAATGGCCGCCCGCCTCCTGATGACATGAGACATCAATGCTTGTTTGAAATTGATCAACATTTTTATGGTCACATGGATGGATTACT ACTAAATGAGTTTAAGTCAGCTGCAAAGGATATCTGCAAGCTTCCGTCTTTTTTTTCTTCCATATTGTTTACAAGAATTGATGTCAATGGCGTTGGCATC GTGACAAGGGATCAGTTTATTGACTATTGGGTCAAAGGGAACTGCTTGACCATGGATTTAGCTACTCGAATGTATATCATTCTCAAACAACCAGATCGTG AATACCTAGCTCAGGAGGATTTCAGACCAGTGTTACGAGAAATTTTGGCCACTCATCCAGGATTGGAATTTTTACAGAGCACTCCAGAATTTCAGGAGAG ATATGCTGAAACGGTCATATACAGAATATTTCACTATGTAAATAGATCAGGAACTGGTCGTCTCACTCTCAAGGAGCTAAAGCGTTCAAACTTGATTGCT GCGATGCATCAAGTAGACGACGAAGAAGATATTAACAAAGTTCTAAGATACTTTTCTTATGAACACTTCTATGTCATATACTGCAAATTCTGGGAGCTTG ACACAGATCATGATTTCTTTATTGACAAAGAGAACCTTATCCGATATGGCAACCATGCTCTTACGTACAGGATTGTTGATAGAGTATTTTCTCAGGTGGC AAGAAAATTTAGGAGCAAGGTTGAAGGCAAGATGGGTTATGAAGATTTTGTCTACTTCATACTCTCAGAAGAGGATAAATCTTCTGAACCTGGCATAGAG TTCTGGTTTAATTGCATTGATCTGGATGCAAACGGTATCCTAACTTCCAACGAGATGCAGTTCTTTTATGAAGAACAGTTACATCGAATGGAGTGCATGG CTCAAGAGCCAGTCCTTTTTGAAGATATATTGTGCCAGATCATAGATATGATTGGACCAGAGTCTGAAGGCCTTGTCACATTGCGTGATATGAAAAGAAC GAAACTTGCAGGTCATGTGTTCAACATTCTTTTCAATCTCAATAAGTTCATTGCCTTTGAAAGTCGAGATCCATTCCTAATTCGTCAGGAACGAGAGAAT CCAACTTTGACAGAGTGGGATCGGTTCGCGCATAGAGAGTATATAAGGCTTTCGATGGAGGACGATGCAGAAGACGTGTCAAATGGAAGTGGAGATATCT GGGACGAATCTCTTGAGGCTCCCTTTTGA
AA sequence Show only first row Show all	>Lus10021174 pacid=23171407 polypeptide=Lus10021174 locus=Lus10021174.g ID=Lus10021174.BGIv1.0 annot-version=v1.0 MDMEGVVSMTDVAAFDPDILQLPELSPLALKANSSLADQLFSQWLSLPHTSRLAKSLLSVAKTGGPLNAVGNSSSPNAGSGGSIPSMFPSASTPPLSPRS VSGSPRTVKQRAGLSSLGSPLKLIKDPVREVIPQFYFKNGRPPPDDMRHQCLFEIDQHFYGHMDGLLLNEFKSAAKDICKLPSFFSSILFTRIDVNGVGI VTRDQFIDYWVKGNCLTMDLATRMYIILKQPDREYLAQEDFRPVLREILATHPGLEFLQSTPEFQERYAETVIYRIFHYVNRSGTGRLTLKELKRSNLIA AMHQVDDEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFFIDKENLIRYGNHALTYRIVDRVFSQVARKFRSKVEGKMGYEDFVYFILSEEDKSSEPGIE FWFNCIDLDANGILTSNEMQFFYEEQLHRMECMAQEPVLFEDILCQIIDMIGPESEGLVTLRDMKRTKLAGHVFNILFNLNKFIAFESRDPFLIRQEREN PTLTEWDRFAHREYIRLSMEDDAEDVSNGSGDIWDESLEAPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28850			Calcium-binding EF-hand family...		Lus10021174 [exp]	0	1
AT5G55100			SWAP (Suppressor-of-White-APri...		Lus10032646 [exp]	2.0	0.9506
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Lus10039131 [exp]	3.0	0.9400
AT4G19110			Protein kinase superfamily pro...		Lus10008303 [exp]	4.9	0.9333
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10033251 [exp]	6.5	0.9299
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Lus10035023 [exp]	6.7	0.9354
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Lus10000833 [exp]	7.7	0.9178
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10001973 [exp]	8.1	0.9262
AT2G44140			Peptidase family C54 protein (...		Lus10027079 [exp]	8.2	0.9411
AT5G36930			Disease resistance protein (TI...		Lus10038532 [exp]	8.5	0.9190
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10041705 [exp]	8.8	0.8972

Compare expression of checked genes

Lus10021174 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.