Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44120 355 / 4e-118 ATCRA1, CRU1, CRA1 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) AT1G03890 330 / 2e-108 RmlC-like cupins superfamily protein (.1) AT1G03880 327 / 3e-107 CRB, CRU2 CRUCIFERIN B, cruciferin 2 (.1) AT4G28520 245 / 4e-75 CRC, CRU3 CRUCIFERIN C, cruciferin 3 (.1.2.3.4) AT2G28680 116 / 1e-28 RmlC-like cupins superfamily protein (.1) AT1G07750 99 / 1e-22 RmlC-like cupins superfamily protein (.1) AT2G28490 62 / 5e-10 RmlC-like cupins superfamily protein (.1) AT2G18540 57 / 2e-08 RmlC-like cupins superfamily protein (.1) AT4G36700 55 / 6e-08 RmlC-like cupins superfamily protein (.1) AT1G02335 42 / 0.0005 GL22 germin-like protein subfamily 2 member 2 precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011816 [exp] 714 / 0 AT5G44120 357 / 1e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10010341 [exp] 593 / 0 AT5G44120 409 / 2e-139 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021180 [exp] 543 / 0 AT5G44120 377 / 1e-126 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10011817 [exp] 530 / 0 AT5G44120 358 / 2e-119 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10021868 [exp] 515 / 0 AT5G44120 330 / 2e-109 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10022927 [exp] 435 / 4e-149 AT5G44120 424 / 5e-145 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024891 [exp] 433 / 3e-148 AT5G44120 428 / 1e-146 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10024889 [exp] 416 / 1e-141 AT5G44120 407 / 1e-138 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Lus10022929 [exp] 348 / 3e-115 AT5G44120 340 / 9e-113 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004300 [exp] 532 / 0 AT5G44120 385 / 7e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004200 [exp] 531 / 0 AT5G44120 383 / 6e-129 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004500 [exp] 529 / 0 AT5G44120 386 / 3e-130 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.019G004400 [exp] 529 / 0 AT5G44120 388 / 5e-131 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.001G308050 [exp] 523 / 0 AT5G44120 392 / 1e-132 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224700 [exp] 411 / 3e-140 AT5G44120 394 / 7e-134 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.002G038100 [exp] 405 / 2e-137 AT5G44120 400 / 9e-136 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.005G224400 [exp] 315 / 1e-102 AT5G44120 280 / 4e-89 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.008G102900 [exp] 113 / 1e-27 AT2G28680 543 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.007G047200 [exp] 112 / 3e-27 AT2G28680 561 / 0.0 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10021179 pacid=23171385 polypeptide=Lus10021179 locus=Lus10021179.g ID=Lus10021179.BGIv1.0 annot-version=v1.0 ATGGCTTCTTCCCGTAACTATACTATCCTTGCTCTTGCACTCTGCTCCGTCCTCCTCTTCCACGCTTGCTCCGCCCAGCATGAAACACGAGAGCAGCAGC AGCAGCAAGGAGGCCGCCGCCAATGGCAGCAGCAGAACGAGTGCCAAATCCGCCGCATCAATCCCCAAGAGCCCGACCGCAGTGTCAAATCGGAGGCTGG CACCACCGATATCTGGGACGAGAACGACGACCAGTTCCAATGCGCCGGCGTAGCCGCTCTCCGCCACACCATCGAGCAGACCATGGCGCAGAGAGCCTTT TTCTGGCCCCCTCACTCCACCGCCCCCAATCTTCTCTTCTTCGCCAAAGGAAGAGGATTCCACGGAGCCGCCTTCCCGGGTTGCCCCGAGACATACCAAT CAGAGGAGGAATCCCAGCAGGAACAGAGACAAGGATCCAGGGACCAACACCAAAAAGTCAGAGAGATCCGCAGGGGAGACGTCATCGCCATCCCCGCGGG AGTCGTAGACTGGTTCTACAACGATGCTCAATCTCCTCTTGTTCTTGTCCAGATCTTCGACACTAGCAGCTCCGACAACCAGCTCGACCAGAACTTCAGA AAATTCTTTCTAGCAGGGAACCCGCAGAGACAGGTGCAGGGGCAGAGAGGGCAGCAGTCGAGACACCTACACCAGGCAGGCGAACAACACAGGGGACAGC AAGGGCAGAGATCCGGCAACATCTTCCAAGCCATCGACGAGCAGTTCTTGGCCGAGGCATTCAACATCGACACCGACCTTGCTAGGAGGATCAAGAGCGA CAACGACAACAGGGGAATTATCGTCAGAGTCGAGCAAGAGCTTGAATTCCTCAGCCCCCGATTCAGCCAACAGGAGAGGGAATCCAGAAGGGAAGGCGGC GAAGAAAGGTACAACGGAATTGAAGAGACCTACTGCACAGCCAAACTGAAGGTGAACATCGACGACCCCTCACGCGCCGACGTCTTCAACCCACGCGCTG GCCGACTCACAACCGTCAACAGCTTCAACCTCCCAATCCTCCGCCAGATCCAGCTCAGCGCACAGAAAGGATTCCTCTACAGGAACGCTCTGATGACGCC GCACTGGAACATCAACGCGCACAGCGTCGCGTACATTACACGCGGGAGCGGTCAGGTCCAGATCGTGAACGAGAACGGAGAGAGCGTGTTCGACGGGCAA GTGCAGCAGGGACAGATAATCACTGCCCCACAGGGCTTCGCTGTGATCAAGAGAGCTGGAAATGAAGGGCTGGAATGGGTTGCATTCAAGACCAACGACA ACGCTAAGATTAACCAGATTGCTGGAAGGGCGTCCACGATTAGGGCGATTCCGAGGGATGTGCTGGCTAACGCGTTCGGGGTGTCGAGGGAGGAGGCCCA GAGGATCAAGTTTAGCCGGAGGGAGGTTGCGCTCTTCAGCCCTGAGAACCAGTCTCAGCAGAGGAGGGACTACTGA
AA sequence Show only first row Show all	>Lus10021179 pacid=23171385 polypeptide=Lus10021179 locus=Lus10021179.g ID=Lus10021179.BGIv1.0 annot-version=v1.0 MASSRNYTILALALCSVLLFHACSAQHETREQQQQQGGRRQWQQQNECQIRRINPQEPDRSVKSEAGTTDIWDENDDQFQCAGVAALRHTIEQTMAQRAF FWPPHSTAPNLLFFAKGRGFHGAAFPGCPETYQSEEESQQEQRQGSRDQHQKVREIRRGDVIAIPAGVVDWFYNDAQSPLVLVQIFDTSSSDNQLDQNFR KFFLAGNPQRQVQGQRGQQSRHLHQAGEQHRGQQGQRSGNIFQAIDEQFLAEAFNIDTDLARRIKSDNDNRGIIVRVEQELEFLSPRFSQQERESRREGG EERYNGIEETYCTAKLKVNIDDPSRADVFNPRAGRLTTVNSFNLPILRQIQLSAQKGFLYRNALMTPHWNINAHSVAYITRGSGQVQIVNENGESVFDGQ VQQGQIITAPQGFAVIKRAGNEGLEWVAFKTNDNAKINQIAGRASTIRAIPRDVLANAFGVSREEAQRIKFSRREVALFSPENQSQQRRDY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10021179 [exp]	0	1
AT2G41945			unknown protein		Lus10017230 [exp]	17.0	0.5963
AT5G62430	DOF	CDF1, AtDof5,5	cycling DOF factor 1 (.1)		Lus10020314 [exp]	38.7	0.5692
					Lus10004190 [exp]	85.3	0.4797
AT5G42905			Polynucleotidyl transferase, r...		Lus10007550 [exp]	97.9	0.5234
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10016190 [exp]	199.9	0.5047
AT1G31280		AGO2	argonaute 2, Argonaute family ...		Lus10018290 [exp]	232.9	0.4844
AT4G35160			O-methyltransferase family pro...		Lus10024678 [exp]	234.5	0.4714

Compare expression of checked genes

Lus10021179 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.