Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G43330 318 / 2e-110 c-NAD-MDH2 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) AT1G04410 316 / 2e-109 c-NAD-MDH1 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT5G56720 274 / 1e-92 c-NAD-MDH3 cytosolic-NAD-dependent malate dehydrogenase 3, Lactate/malate dehydrogenase family protein (.1) AT5G58330 110 / 5e-29 lactate/malate dehydrogenase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011819 [exp] 355 / 1e-124 AT5G43330 613 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10021870 [exp] 330 / 1e-114 AT5G43330 606 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10041144 [exp] 335 / 2e-113 AT5G43330 590 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10037935 [exp] 106 / 9e-27 AT5G58330 709 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Lus10038668 [exp] 105 / 9e-27 AT5G58330 707 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G166800 [exp] 342 / 2e-119 AT5G43330 605 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Potri.010G071000 [exp] 340 / 9e-119 AT5G43330 602 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Potri.002G141700 [exp] 309 / 3e-106 AT1G04410 572 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.002G141900 [exp] 255 / 3e-85 AT1G04410 501 / 5e-180 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.008G031700 [exp] 99 / 4e-24 AT5G58330 710 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Potri.001G376500 [exp] 40 / 0.0005 AT3G15020 523 / 0.0 mitochondrial malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain CL0341 [flax] [poplar] LDH_C PF02866 [flax] [poplar] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10021184 pacid=23171416 polypeptide=Lus10021184 locus=Lus10021184.g ID=Lus10021184.BGIv1.0 annot-version=v1.0 ATGGTTGGTGGCTTCCCTAGGAAAGAAGGTATGGAGAGGAAGGATGTGATGTCTAAGAACGTCTCCATCAACAAGTCCCAGGCTTCCGCCCTAGAGAAGC ATGCTGCTGCAAACTGCAAGGTTCTGGTTGTTGCTAACCCAGCAAACACCAATGCCTTGATTCTCAAGGAATTTTATCCCGATGTCAACCATGCCACTGT TAAAAATTCATCTGGTGATAAGCCTGTCAGAGAGCTTGTTAAGGATGACGTGTGGCTGAACGCTGAGTTCATTACCACCGTCCAACAACGTGGTGCTGCA ATCATCAAGGCTAGGAAGCTCTCAAGTGCACTATCTGCTGCTAACTCAGCTTGCGACCATATCCGTGACTGGGTTCTCGGAGCTCCCCAGGGAACCTGGG TTTCAATGGGTGTGTACTCTGATGGTTCGTACAATGTCCCTGCTGGACTTATCTATTCCTTCCCAATGACATGCCAGAATGGAGAGTGGAAGATTTTCCA GGGTCTTGCAATTGATGAATTTTCAAGGAAGAAGCTGGATCTGACAGCAGAGGAGCTGAGCGAGGAGAAGGCTCTTGCTTACTCGTGTCTCAATTAA
AA sequence Show only first row Show all	>Lus10021184 pacid=23171416 polypeptide=Lus10021184 locus=Lus10021184.g ID=Lus10021184.BGIv1.0 annot-version=v1.0 MVGGFPRKEGMERKDVMSKNVSINKSQASALEKHAAANCKVLVVANPANTNALILKEFYPDVNHATVKNSSGDKPVRELVKDDVWLNAEFITTVQQRGAA IIKARKLSSALSAANSACDHIRDWVLGAPQGTWVSMGVYSDGSYNVPAGLIYSFPMTCQNGEWKIFQGLAIDEFSRKKLDLTAEELSEEKALAYSCLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Lus10021184 [exp]	0	1
					Lus10008920 [exp]	3.2	0.8573
AT3G51530			F-box/RNI-like/FBD-like domain...		Lus10003696 [exp]	3.9	0.7404
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10010330 [exp]	5.2	0.6880
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10020252 [exp]	8.1	0.7719
AT5G64700			nodulin MtN21 /EamA-like trans...		Lus10020867 [exp]	8.5	0.7612
					Lus10010697 [exp]	12.2	0.7384
AT4G13230			Late embryogenesis abundant pr...		Lus10022822 [exp]	13.2	0.7384
AT5G20610			unknown protein		Lus10025003 [exp]	14.1	0.7384
					Lus10008327 [exp]	15.0	0.7384
AT2G27110	FAR1_related	FRS3	FAR1-related sequence 3 (.1.2....		Lus10008762 [exp]	15.8	0.7384

Compare expression of checked genes

Lus10021184 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.